Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00556 ATGGCGTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCGTCGCCTGGTGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCATCTTCAGGGGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTGCTACGCCGCCGCGTCAACGATCCCGAATGGTCTCGTCGGAAACCACTCCGAAGGCTACGGAGTCGCGCTCGCGTCGGCAGGGAGGTGGGAGAAGAGCGTCCGGAGGTGGAGCGACCCCGATGGCTGCTACACCTTCATCGACGGATGATATTCCGCCGTCGACGGAACCTGGCGACGGCGACGACATGGATGAGGACCATCCGACCTTCGTATGGGGGACGAATATCAGTGTTGACGATGTGAAGGGAGCGATCATTCGGTTTTTGAGGCATTTCCGTGGTCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATACGCGGAGGTAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGAAGTGGATGCGCAGGATGTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGACATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAACCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATAATACGGTGTAGTTCCATAATTCCTGAGATCAGGGAGGCGATGTTTAGATGTCTCGTATGTGGATACTACACTGACCCAGTAGCTATTGAGAGAGGTCAAATAACTGAACCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGAAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTACGGCTTCAGGAGACTCCTGATGAGATACCAGAAGGAGGGACACCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTATAGGGCCATGAGTGTGAGAATTGGACCAACCCAGAGAACTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCGAGAATGGTGGCTGAAGACCCAACTGGAGCTGGGAACCGGTTGGGTGGAAATGTCGATGATGTTTCGTTTGATGAAGCGAAGGTGGAAGAGCTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGCGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGGTTGACAGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTACTGGAGAGTGGGGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAACGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGAATCATTGCTTCCCTTAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCGCATTACACTTCGACAACCCAGAGGGCATTGAGCAGGATTTCATGGACCTTCATACCTTGACTTCATACATCAGCTATGCTAGGAAAAACATTCACCCAAAATTATCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATAACAGCTACTCCCAGACAGATTGAGAGTTTAATACGTTTAAGTGAAGCCCTTGCTCGTATACGTTTTTCAGAATGGGTTGAAAAGGGCGATGTTCTTGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACCGATCATTCTACAGGAACCATTGACATGGATCTGATCAACACGGGAGTATCGGCAAGCGAACGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAACATAATCATGGAGAAAATGCAGCTCGGAGGGCCTTCCATCCGCCTGTCAGAGTTGCTGGATGAGCTGAAGAAGCAGAATCCTGATAACGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGTGAGGGATTTGTAGCGATCCATGGTGATAGCATAAAGAGAATGTGA 2538 46.69 MASDSSPVNFNTGPSSPGDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEIATPPRQRSRMVSSETTPKATESRSRRQGGGRRASGGGATPMAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRGRQASQSEGDFHTEGKYAEVIKRVLEIEGDSLEVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAMFRCLVCGYYTDPVAIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDPTGAGNRLGGNVDDVSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFMDLHTLTSYISYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLINTGVSASERMRRESLLSATRNIIMEKMQLGGPSIRLSELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRM 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6397771 6403636 - Cp4.1LG15g05620.1 Cpe15g00556 482014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00556 845 Coils Coil 805 825 - -
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 451 462 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 597 614 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 749 758 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 Gene3D - 263 315 - -
Cpe15g00556 845 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe15g00556 845 MobiDBLite consensus disorder prediction 46 68 - -
Cpe15g00556 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 90 844 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe15g00556 845 ProSiteProfiles MCM family domain profile. 435 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 Pfam MCM P-loop domain 423 645 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 Gene3D - 754 836 IPR036388 -
Cpe15g00556 845 MobiDBLite consensus disorder prediction 1 119 - -
Cpe15g00556 845 Gene3D - 413 753 IPR027417 -
Cpe15g00556 845 Gene3D - 236 375 IPR012340 -
Cpe15g00556 845 Pfam MCM OB domain 236 365 IPR033762 -
Cpe15g00556 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 761 IPR027417 -
Cpe15g00556 845 Gene3D - 125 231 - -
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 564 577 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 600 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Cpe15g00556 845 Pfam MCM AAA-lid domain 661 747 IPR041562 -
Cpe15g00556 845 SMART mcm 232 749 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 90 844 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe15g00556 845 Pfam MCM N-terminal domain 134 232 IPR027925 -
Cpe15g00556 845 MobiDBLite consensus disorder prediction 1 34 - -
Cpe15g00556 845 CDD MCM4 438 747 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00111 Cpe15g00556 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00890 Cpe-Chr12:7737505 Cpe15g00556 Cpe-Chr15:6397771 2.63E-109 dispersed
Cpe15g00556 Cpe-Chr15:6397771 Cpe17g00747 Cpe-Chr17:5904660 4.56E-114 dispersed
Cpe07g01135 Cpe-Chr7:9957061 Cpe15g00556 Cpe-Chr15:6397771 7.24E-107 transposed
Cpe08g00006 Cpe-Chr8:55997 Cpe15g00556 Cpe-Chr15:6397771 4.07E-104 transposed
Cpe15g00364 Cpe-Chr15:4833021 Cpe15g00556 Cpe-Chr15:6397771 5.50E-73 transposed
Cpe19g01218 Cpe-Chr19:8191358 Cpe15g00556 Cpe-Chr15:6397771 6.74E-116 transposed
Cpe03g00916 Cpe-Chr3:5971105 Cpe15g00556 Cpe-Chr15:6397771 4.75E-107 transposed
Cpe15g00556 Cpe-Chr15:6397771 Cpe04g00111 Cpe-Chr4:991728 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00556 K02212 - csv:101211850 1533.08