Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00559 ATGAAGATCCGTTGCGATGTTTGTGATCAGGCTGAGGCTTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGCTGTGATCTCCATGTTCACCGCGCCAACAAGCTCGCTGGAAAGCACTCACGATTCTCGTTAATTCAGCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGTCGCGCGCTCGTTTTCTGTCAACAAGATAGGGCAATAATTTGCAGAGAATGCGACATTTCGATTCACGAAACGAACGAACATACGCAGAAGCACAGCCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTCCCAAACATCTTCGTCCTCCCATGGCTGCGATGCGGCGATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAAGCCTAAAATAGCCGTGAAGGCAATCAGCTCTCATTCCGCTGAAAAAGCTGCTCCATCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCCTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGAATGGTGCTTGGAGGAATTTCTCGATCCTTCCGCCGTTGCCAATCACTTCTGTAAGCTTAATGCAATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACAATCAGACTTGGCAACACCTCGAAATTTGTAGGTAA 708 47.74 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLIQPIKKDSPRCDICQERRALVFCQQDRAIICRECDISIHETNEHTQKHSRFLLTGVKLSSTCFSSQTSSSSHGCDAAMDVKTGSSHACSKKPKIAVKAISSHSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPEWCLEEFLDPSAVANHFCKLNAICESESGEPARIVRHNQTWQHLEICR 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6419234 6420921 + Cp4.1LG15g05520.1 Cpe15g00559 482017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00559 235 Gene3D Classic Zinc Finger 1 99 - -
Cpe15g00559 235 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 208 - -
Cpe15g00559 235 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 208 - -
Cpe15g00559 235 CDD Bbox1_BBX-like 5 47 - -
Cpe15g00559 235 CDD Bbox1_BBX-like 58 100 - -
Cpe15g00559 235 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe15g00559 235 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cpe15g00559 235 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cpe15g00559 235 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cpe15g00559 235 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cpe15g00559 235 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00559 Cpe16g00269 CCT
Cpe15g00559 Cpe16g00269 ECH
Cpe04g00107 Cpe15g00559 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00559 Cpe-Chr15:6419234 Cpe17g01088 Cpe-Chr17:8252826 1.21E-33 dispersed
Cpe11g00234 Cpe-Chr11:1265779 Cpe15g00559 Cpe-Chr15:6419234 3.39E-53 wgd
Cpe15g00559 Cpe-Chr15:6419234 Cpe16g00269 Cpe-Chr16:4700975 4.10E-64 wgd
Cpe15g00559 Cpe-Chr15:6419234 Cpe04g00107 Cpe-Chr4:966757 2.58E-120 wgd
Cpe15g00559 Cpe-Chr15:6419234 Cpe07g00385 Cpe-Chr7:2483126 3.88E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50625 PF00643 zf-B_box 3.10E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00559 - - cpep:111811336 465.307