Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00561 ATGGAAACCGAAGAAGATGATTCTTCGAAACACGAACAAAAATCTCCTCTGTATGTCGAAGATGGAATCTTGGATGTTAAGTGTGACGTTCATCGGGAGCTTCAGAGCAATGAAGAACATGAAGAACAGCATTGTGTGTTTAAGTCCTCCATTGTCGAAACGGAGTTTCCAGTTAATACGAGCGTTGAATCTTCACCGGCCGGAGATGCAATTATCGGGGATGAGAGTCTTGCGGCGGATACTTGTTTAGAGATGAAGAAGGATGTGGCGGAGGAGATGGAGAGAGCAGAGGAGAAGGATTTTCGTAACGTTATTGAGGATGTGGCGGAAGATTCTATGAAGTTGGAGATGGCGTTATTGGAGCAAAGGGATTTCGATGATATGAAAGAGAATACAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGCTGTGACTGAATTTGTGGATGGCGAGATGTTAAATGAAACGGTTTTGGTTGGTGTAGCTGAAAATCAGGTTGAGGGCGAGGTTTCGATGGCGAATTTTCCAGAGGACACGGTCGGAGAAGGCGCGGGTGCAGTTGGCTGTGCTGAGACAACCGGGAAGACAAGCCTGAGTGATGTTTTGGCTGAGGAAACGCTTGTAGATGGAGCTGATGCTACCAATTTGGTGCATAAGACAGTGGAGGAAGAGAATGCTGATGACTCCGACGAATCGAAGGATACAGAGGTTCCTAAGCAAAAAAATTTTGCTTTGGAGGAAAGGGAATTAGGCGTCCCGGTTCGGCTGGAAGAAAACTCTGAGTTAAAAGATAGTTTGGCAGATGAGGCTGTGGTGGAGGAGGGACGGGCAACGAATTTAGCGGATAGAACTGGTGAAATGTGCAAGATGGAGAATGTCTCGAGCACGGCGGATGAGGTGGGGCTGCCACATTTAGCTGGGAAGATGGATGAGGCGATAAATGTAGAAAATGCTGAAGACAAGACTGCTGAGATGGATGGAATATGTATGGGAAACAAGGCTACCGATGTGGCGATGATGGAGAATTCGGCACATGAAACCCCAGAGATCAAGGCAGTAGACATAGCAGACTATGGTATCGAGGCGTTGAAGATGGAGAACGTGGAAGATAAGGAAGTGGGGGTTCAGGGATTGGGTTCGGCCAATGAGAGCGTCGAGGTTGGAAAGATTGAGAATATGGGGGGCGAGACTGCAGAGGCCAAGGGAGTGCAAGTGACAGACTACACCCCGGAAATGGTAAAATCGGAGAACGTGGAAGAAAACAAGACTGCACAAGTTGAGGAAATAGCTATGGCCGAAGAGACTGCGGAGGCCGACGACGACATGGTTTATTTGGTGGACGAAGGGATTGGGTCGGAGGAGACTGATGCAAACATGACATACTTGGTGGAGGAGACAGAAGCAGGAGAGGAGGCTGAGGAGATGGATATCACGGAGGAGGTCGATGAGGCAAATAAAGGTAGCAGTGGTGCGAAAAGGAAGCGTGGAAAGAATGCTAAAGCTCCAGCTAGAGCGCCTTCTAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGCGACCTTGTACTCTGCGATCGCAGAGGTTGTCCCAAGGCATACCACCCTTCCTGTATTAATCGCGACGAGGCATTCTTCCGAGCCAAGGGTCGATGGAACTGTGCTGCTCATTCAATTGAAACTGAAAGGCATTATCTGGTAGTTCTAGGTTGGCATCTTTGTAGCAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACATTTTCCTTGTGCAAGAGCTGCACAAAAAATGCTGTTATTTTATGTGTTAGAGGGAACAAAGGCTTCTGCGAGGCGTGCATGAGATTTGTGATGTTGATCGAAAAGAAGGAGCAGGGGAATAGCGAAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGAGATGAAGGGAAAACTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCGTGGAAAGGATCTGAGACGCTAACTAACAGACCCGATTCACCTAGTGAGCTATGTGATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGCTCTAAGAGAAAAAAAGCTAAGAAAAAGTCAAAATCTCATGCAAAGGAAATGAGTTCGCCTAGTATGCCAATTATACCTGATTCTCAAGGGCTATCCACGGATACCGAAGTCGAGTGGGCATCTAAAGAGCTCTTGGAGTTCGTAATACACATGAAAAATGGCGATAAAACCGTTTTATCTCAGTTTGATGTTCAGGCTCTCTTATTAGAATACATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTCGAGAATTTGTTTGGAAAGCCACGCGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAAGATGCCCAGATAAATGACTTCCAAGCGAGTGTCGCCGATACCGAATCTAGTCAGTTGGAGGCTGATGGGAACACTGATGCGTCGGGGAAGACTAAGAAAGAGAAGAAACGCAGGTATCGGAAAAAAGGTGACGAGAGAGGAATGCAGAGTAACCTTGATGACTATGCAGCCATTGATACTCACAACATTAACTTGATTTACTTGAGACGTAATTTGGTAGAATATCTGATTGAAGATGAGGAGAGTTTTCACGACAAGGTTGTTGGTTCTTTTGTGAGGATACGAATATCGGGCAATGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGCAAAGCATCCGAAACTTATAAAGTCGGTAAAAAGATGACGTATATCATGCTGGAGATCTTGAATTTGAATAAAACAGAAGTGATTTCAATCGATATTATCTCGAATCAAGAGTTCACAGAGGAGGAGTGCAAGCGGCTCAGGCAGAGCATCAAGTGTGGAATCCTTAACCGTTTGACTGTGGGTGACCTCCATGAGAGAGCAATGTCACTTCAAGATGCTAGAGTAAAGGATTGGATGGAAACCGAGATAGTTCGACTAAGTCATCTTCGTGATCGAGCAAGCGAAAAAGGGCGTCGAAAAGAATATCCTTTTTTCAATAGTTTGGAATGTGTCGAGAAACTACAGCTTTTGAAGACGCCGGAGGAGCGGCAGCGCAGACGAGAGGAAATACCAGAAATACATGCAGACCCTAATATGGATCCAAGCCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACAAGAAACCTATACGTCGTCGAGAGGCACGAGCTTTGGCAGGAGGACGAGGGAGCCGGTTTCTCCTGGAAAAGGAGTTTCAAATTTGAACGATTCCTGGAGCGCGACCAGAAACTTTTCGAACACGACTCGGGACTTGACCAGGAACTCGTCTGGGAAAGGCTTCTCGATCCAAGGCGAAGATGCCATTGGTTCTGGTGAAATCATAAATGAAAATTCTTGGAGTCAAGGAAGAGATAGAGATGTTAAACAAACAAACAAGTGGGGCAAGCAACAAGTTTCACCCAGTTCGGATATCACTGCTAGGAATATCTCGTCCGGGGCAGCAGCAGCCGAGTTGTCTTCTGCATCTCACACGGTAAATCCAGCAGCATCTCCATTGGTTGGGACTACACAGAATGCTGCTGCCATTGTTAATGAAACCGAGAAGGTATGGCGTTATCAGGATCCGTCTGGGAAAGTTCAGGGACCGTTTTCGATGGTGCAGCTACGTAAATGGAGCAACACAGGCTATTTTCCTGCGGACTTGAAAGTATGGAGAGCCTCAGACAAGCAAGACGATTCCCTGCTTTTGACCGATGTCTTGGCCGGGAAGATCCCGAAGGACACTCCATTGACGAATAACAGCTTCCAAGCAAACACGCCTGCTTCTTCATTTGTCGGGAAGCCTCAGGGAGCTGTTTTGCAGTCAGGTATGGATGGTCAGAATACTAATCCGACTTCTTATGGCCAATCGTCTGGAGGAAGATGGAAATCTGAAAATGAAGTTAGCCCTACGGGTAGACCTGCCTCGGCTCCGGTAGAAGTCCCCAGGTACTCGGGAGACCGATGGTCTTCTGACCACGGTATTAAGAACTTCACAAGGCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACAAAGGAGGAGCAGCAGCCATTTCAAGTGGCTGCATCGTTCTTGCACAATTCTTCACTTATGCAACGCTCTGAAAACGACTCGTTACGCTCGAATTCTGGCCTGAATTCAACCGAAAAGGGCACGGGTTTAGGTCCTATGAATGTGCTTCAAAATCATCATTCTCAGCCAGTAAGACAATCACCTATCATGGGTGATGCTTCGGTCTATCCAGCTGCAGATATCAAAAGCATTAGCGCAAATCTTCACTGTTTAGTACAATCCATCAACAATCGTAACACTCGTATGGAAGCTCAAGGACATGGGTCTAGCGCTGTTCAGAATGCACAATCTCTCAAACTTGAATCAAACCTTTCTTCTACCATGCCACCAGCACAAACTCTTCCGAGTCGTTGGGGGGAGATGCCCCCTGCTACGTCGTTCAGTGCAGGAAGTTCAACCACGAGTTTCTCCATGCCCGGTTTGACGAGTTTTCCATCCTCGGACCCTTGGCGATCTACGCCTCCTATTCCCAGTAACCCGCCGCACATTCAGTCTTCAACTCCAGCCAATCTACCTCGTGGAATGGGTGCTCCAGACGGCCAAAGTACCGTTCCACGACTGGGCTCGGAGACTCCGAACCCAGGCTGGGGATCAATGCCAAACATGGGTCGAGGTTCAATTGCAGCACCTCCAAATGCTACTGCTGGTATGATGTGGGGAACTGCTCCTCCTCCTACAGGTACAAACCCAGGTTGGATTGCTCCAGGTCAAGGACCACCAACCGGAAACAACCTCCAAGGATGGTCCGCGCATGGCCCGATTCCACCTCCAGTAAACGCAACTCCGGGATGGGTTCCCCCCAGCCATGGACCAATGCCACCCATGAACATGAATCCCAGTTGGCCCGTCCCGTACTCGAATCAGAACATGTGGGGTAACGAGCACGGTAGAAATGGGGATAGATTTTCGAATCAAAAGGACGGCGGCTCTCACGGCGGAGATCCGGGGAACGGAAGTAAATCATGGGGGATGCAACCATCTTATGGTGGTGGTGGTGGTGGTGGGAGTTCTTGGTCTCCTTATAATAAAGCACAAAAACTGTGCAAATACCATGAAAGTGGACACTGCAAGAAAGGAGGTGCTTGTGATTACAGGCACAACTAG 5343 47.26 METEEDDSSKHEQKSPLYVEDGILDVKCDVHRELQSNEEHEEQHCVFKSSIVETEFPVNTSVESSPAGDAIIGDESLAADTCLEMKKDVAEEMERAEEKDFRNVIEDVAEDSMKLEMALLEQRDFDDMKENTGEEEEEEEEEEEKAVTEFVDGEMLNETVLVGVAENQVEGEVSMANFPEDTVGEGAGAVGCAETTGKTSLSDVLAEETLVDGADATNLVHKTVEEENADDSDESKDTEVPKQKNFALEERELGVPVRLEENSELKDSLADEAVVEEGRATNLADRTGEMCKMENVSSTADEVGLPHLAGKMDEAINVENAEDKTAEMDGICMGNKATDVAMMENSAHETPEIKAVDIADYGIEALKMENVEDKEVGVQGLGSANESVEVGKIENMGGETAEAKGVQVTDYTPEMVKSENVEENKTAQVEEIAMAEETAEADDDMVYLVDEGIGSEETDANMTYLVEETEAGEEAEEMDITEEVDEANKGSSGAKRKRGKNAKAPARAPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGRWNCAAHSIETERHYLVVLGWHLCSNCEKTAHYMCYTCTFSLCKSCTKNAVILCVRGNKGFCEACMRFVMLIEKKEQGNSEKGQIDFNDKNSWEYLFKEYWTEMKGKLSLTFDELVHAKNPWKGSETLTNRPDSPSELCDVDGGSDLDVSENEESGSSKRKKAKKKSKSHAKEMSSPSMPIIPDSQGLSTDTEVEWASKELLEFVIHMKNGDKTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQINDFQASVADTESSQLEADGNTDASGKTKKEKKRRYRKKGDERGMQSNLDDYAAIDTHNINLIYLRRNLVEYLIEDEESFHDKVVGSFVRIRISGNAQKQDLYRLVQVVGTSKASETYKVGKKMTYIMLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLHERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFFNSLECVEKLQLLKTPEERQRRREEIPEIHADPNMDPSHESEDEDEADDKRQETYTSSRGTSFGRRTREPVSPGKGVSNLNDSWSATRNFSNTTRDLTRNSSGKGFSIQGEDAIGSGEIINENSWSQGRDRDVKQTNKWGKQQVSPSSDITARNISSGAAAAELSSASHTVNPAASPLVGTTQNAAAIVNETEKVWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLKVWRASDKQDDSLLLTDVLAGKIPKDTPLTNNSFQANTPASSFVGKPQGAVLQSGMDGQNTNPTSYGQSSGGRWKSENEVSPTGRPASAPVEVPRYSGDRWSSDHGIKNFTRLPSPTPSSGGTKEEQQPFQVAASFLHNSSLMQRSENDSLRSNSGLNSTEKGTGLGPMNVLQNHHSQPVRQSPIMGDASVYPAADIKSISANLHCLVQSINNRNTRMEAQGHGSSAVQNAQSLKLESNLSSTMPPAQTLPSRWGEMPPATSFSAGSSTTSFSMPGLTSFPSSDPWRSTPPIPSNPPHIQSSTPANLPRGMGAPDGQSTVPRLGSETPNPGWGSMPNMGRGSIAAPPNATAGMMWGTAPPPTGTNPGWIAPGQGPPTGNNLQGWSAHGPIPPPVNATPGWVPPSHGPMPPMNMNPSWPVPYSNQNMWGNEHGRNGDRFSNQKDGGSHGGDPGNGSKSWGMQPSYGGGGGGGSSWSPYNKAQKLCKYHESGHCKKGGACDYRHN 1780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6436404 6445088 - Cp4.1LG15g05590.1 Cpe15g00561 482019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1701 1754 - -
Cpe15g00561 1780 ProSiteProfiles Plus3 domain profile. 888 1021 IPR004343 GO:0003677
Cpe15g00561 1780 CDD SWIB-MDM2_like 752 827 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1307 1360 - -
Cpe15g00561 1780 Gene3D - 889 1019 IPR036128 GO:0003677
Cpe15g00561 1780 Gene3D SWIB/MDM2 domain 742 836 IPR036885 -
Cpe15g00561 1780 SUPERFAMILY GYF domain 1232 1296 IPR035445 -
Cpe15g00561 1780 Pfam Plus-3 domain 893 996 IPR004343 GO:0003677
Cpe15g00561 1780 Coils Coil 418 438 - -
Cpe15g00561 1780 Coils Coil 125 149 - -
Cpe15g00561 1780 CDD GYF 1243 1298 IPR003169 GO:0005515
Cpe15g00561 1780 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 342 1780 - -
Cpe15g00561 1780 SMART rtf1 888 998 IPR004343 GO:0003677
Cpe15g00561 1780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 622 IPR013083 -
Cpe15g00561 1780 ProSiteProfiles Zinc finger C3H1-type profile. 1755 1780 IPR000571 GO:0046872
Cpe15g00561 1780 SMART PHD_3 518 564 IPR001965 -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1124 1157 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1538 1562 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1067 1087 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1385 1405 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 679 745 - -
Cpe15g00561 1780 SMART gyf_5 1244 1299 IPR003169 GO:0005515
Cpe15g00561 1780 CDD Bbox1 579 604 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1188 1202 - -
Cpe15g00561 1780 Pfam SWIB/MDM2 domain 754 827 IPR003121 -
Cpe15g00561 1780 Pfam GYF domain 1246 1287 IPR003169 GO:0005515
Cpe15g00561 1780 ProSitePatterns Zinc finger PHD-type signature. 519 594 IPR019786 -
Cpe15g00561 1780 SUPERFAMILY SWIB/MDM2 domain 747 828 IPR036885 -
Cpe15g00561 1780 SMART swib_2 747 832 IPR019835 -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 470 509 - -
Cpe15g00561 1780 PANTHER UNCHARACTERIZED 342 1780 - -
Cpe15g00561 1780 SUPERFAMILY Plus3-like 889 1019 IPR036128 GO:0003677
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1067 1202 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1516 1599 - -
Cpe15g00561 1780 ProSiteProfiles SWIB/MDM2 domain profile. 746 829 IPR003121 -
Cpe15g00561 1780 Coils Coil 79 99 - -
Cpe15g00561 1780 Gene3D - 1245 1303 IPR035445 -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 846 877 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 130 146 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1422 1461 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 1307 1405 - -
Cpe15g00561 1780 CDD PHD5_NSD 518 563 - -
Cpe15g00561 1780 ProSiteProfiles GYF domain profile. 1243 1297 IPR003169 GO:0005515
Cpe15g00561 1780 SUPERFAMILY FYVE/PHD zinc finger 514 575 IPR011011 -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 225 249 - -
Cpe15g00561 1780 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00561 - - - csv:101218325 2499.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00103 Cpe15g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01836 Cpe-Chr3:13682561 Cpe15g00561 Cpe-Chr15:6436404 6.83E-61 dispersed
Cpe14g00547 Cpe-Chr14:3463318 Cpe15g00561 Cpe-Chr15:6436404 0 dispersed
Cpe15g00561 Cpe-Chr15:6436404 Cpe15g00915 Cpe-Chr15:8775345 1.89E-11 dispersed
Cpe17g00018 Cpe-Chr17:140230 Cpe15g00561 Cpe-Chr15:6436404 1.79E-06 dispersed
Cpe19g01189 Cpe-Chr19:7977606 Cpe15g00561 Cpe-Chr15:6436404 3.95E-06 dispersed
Cpe15g00561 Cpe-Chr15:6436404 Cpe04g00103 Cpe-Chr4:924782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50626 PF03126 Plus-3 1.20E-23 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00561 Cpe_Chr15 FPKM 3.841031 2.380423 5.969456 5.002372 2.245079 1.945591 1.840167 23.20816 24.275826 22.939482