Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00562 ATGAAAAGGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTGGTGGTGGTGGTATTTTCACATATCAGTGGGAATAAGTATTGGAGAATAAGTTTGGAAATGAGTTCAGATAGCAGGAGTGGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCACATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCTAATGAAGGCATCTGCCACACCTGTGGCAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCTCCTGGAGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAACGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAACGATCCTATTTGCAACTTGTGTAATGTATCAGGGCATGTCGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTTGACCGAGGCAGTGGCGGTGGCAGTGTGCGTGGTGGTGCTGGTGGTTACCGGGATGTTGTGTGTAGGAAATGCCAGCAGCTTGGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATATGCCATAACTGCGGGGGACGAGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGA 894 51.68 MKRRRQHRCDILVVVVVVVVFSHISGNKYWRISLEMSSDSRSGSRSRSRSRSRSPLDRKIRSDRFSHRDAPYRRESRRGFSRDNLCKNCKRPGHFARECQDVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGGAGGYRDVVCRKCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6446392 6449584 - Cp4.1LG15g05600.1 Cpe15g00562 482020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 143 156 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 86 101 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SUPERFAMILY Retrovirus zinc finger-like domains 77 121 IPR036875 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 207 222 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 PANTHER OS10G0545300 PROTEIN 42 297 - -
Cpe15g00562 297 Gene3D - 186 234 - -
Cpe15g00562 297 Gene3D - 141 185 - -
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 271 286 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SUPERFAMILY Retrovirus zinc finger-like domains 122 159 IPR036875 GO:0003676|GO:0008270
Cpe15g00562 297 Gene3D - 244 288 - -
Cpe15g00562 297 SMART c2hcfinal6 168 184 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 250 266 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 206 222 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 187 203 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SMART c2hcfinal6 270 286 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SUPERFAMILY Retrovirus zinc finger-like domains 185 224 IPR036875 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 169 184 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 251 264 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 SUPERFAMILY Retrovirus zinc finger-like domains 242 288 IPR036875 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 124 139 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 ProSiteProfiles Zinc finger CCHC-type profile. 188 203 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 124 139 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 270 286 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 250 264 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 187 203 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 168 184 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 206 222 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 Pfam Zinc knuckle 142 157 IPR001878 GO:0003676|GO:0008270
Cpe15g00562 297 MobiDBLite consensus disorder prediction 42 76 - -
Cpe15g00562 297 Gene3D - 63 120 - -
Cpe15g00562 297 MobiDBLite consensus disorder prediction 39 76 - -
Cpe15g00562 297 PANTHER - 42 297 - -
Cpe15g00562 297 Gene3D - 121 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00562 K09250 CNBP; cellular nucleic acid-binding protein - csv:101213305 503.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00102 Cpe15g00562 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00562 Cpe-Chr15:6446392 Cpe18g00670 Cpe-Chr18:6742435 5.70E-08 dispersed
Cpe15g00562 Cpe-Chr15:6446392 Cpe04g00102 Cpe-Chr4:919182 7.62E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00562 Cpe_Chr15 FPKM 19.977978 23.909309 21.235727 24.601786 46.901505 41.340508 42.691246 21.728046 18.854719 18.611984