Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00572 ATGAACGCAGGAATTGGGGTTATCCCACTTGAATCAACCTTCATTTCAAGATTTGTCAAGAAGAAGAATAATTTGAATATGATCATCCAATGGGTGACATCACAGTTCCCTGCAGTGAAGAAACTTTTCTCAGTCTCACTCAGAATACATACCATGGGATTCCGCTTGATAAACAGCCCTAGAAAATCGTCATCGACTGTTCCGAAGGGGTTTTTCGCCGTCTACGTCGGAGAGACCCAAAAGAGACGACATGTGATTCCGATTTCTTACTTGAAGCATCCGTCGTTTCAAGATTTGTTGAGTAAAGCCGAAGAAGAGTTCGGATTCGATCATCCGATGGGAGGCTTGACGATCCCTTGCAACGAAGATGTGTTCTTCGAACCCGCCGCTCTCAAGCACATTGTCAAGCGCTGCTCCAGCTTAGGCCGGAAGCAAGACGCCGCCGCTACCACCACCGCCTACGACGGCGTTCCCAAGGGACATTTCGCCGTCTACGTCGGCGAGCATCGGAGCCGATATGTCGTCCCCATTTCCCTCTTGACTCACCCTGATTTTCAGTGTCTCCTCCGCCTCGCGGAGGAGGAATTCGGCTTCCACCACCATATGGGCCTCACTATTCCTTGTGAAGAGGTG 633 50.08 MNAGIGVIPLESTFISRFVKKKNNLNMIIQWVTSQFPAVKKLFSVSLRIHTMGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEPAALKHIVKRCSSLGRKQDAAATTTAYDGVPKGHFAVYVGEHRSRYVVPISLLTHPDFQCLLRLAEEEFGFHHHMGLTIPCEEV 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6539873 6552415 - Cp4.1LG15g05860.1 Cpe15g00572 482030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00572 211 Pfam Auxin responsive protein 139 211 IPR003676 GO:0009733
Cpe15g00572 211 Pfam Auxin responsive protein 59 126 IPR003676 GO:0009733
Cpe15g00572 211 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 62 125 IPR003676 GO:0009733
Cpe15g00572 211 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 129 211 IPR003676 GO:0009733
Cpe15g00572 211 PANTHER SMALL AUXIN-UP RNA-RELATED 129 211 - -
Cpe15g00572 211 PANTHER SMALL AUXIN-UP RNA-RELATED 62 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00572 - - K14488 aprc:113865304 165.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01302 Cpe-Chr5:9100175 Cpe15g00572 Cpe-Chr15:6539873 2.26E-16 dispersed
Cpe06g00075 Cpe-Chr6:368951 Cpe15g00572 Cpe-Chr15:6539873 1.00E-18 dispersed
Cpe10g00655 Cpe-Chr10:3770276 Cpe15g00572 Cpe-Chr15:6539873 2.17E-21 dispersed
Cpe15g00572 Cpe-Chr15:6539873 Cpe19g00851 Cpe-Chr19:6289892 2.47E-20 dispersed
Cpe11g00246 Cpe-Chr11:1336769 Cpe15g00572 Cpe-Chr15:6539873 4.88E-16 wgd
Cpe15g00572 Cpe-Chr15:6539873 Cpe16g00284 Cpe-Chr16:4828593 6.75E-20 wgd
Cpe15g00572 Cpe-Chr15:6539873 Cpe04g00568 Cpe-Chr4:6109489 1.19E-18 wgd
Cpe15g00572 Cpe-Chr15:6539873 Cpe05g01301 Cpe-Chr5:9080451 4.91E-20 wgd
Cpe15g00572 Cpe-Chr15:6539873 Cpe07g00373 Cpe-Chr7:2400778 1.85E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000296 4 5 3 8 6 5 4 3 5 2 4 5 10 4 5 7 5 0 10 5 5 4 5 3 2 5 5 10 5 0 144
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00572 Cpe_Chr15 FPKM 97.335823 106.472244 7.197804 7.935796 4.792846 5.488639 5.054463 1.577076 1.752728 2.190182