Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00587 GCGCGTGGCGGTTCATGGCCAAAGGATGAGCTTTGGAGGTCGCATTATCAAATTGGGAGCAGATTTTTGCGAAGTTCGAGGTATCCTCTCTACTGTACGAAGCAACGCCTTTCGTTTTGCTGCTCTGTAATGGCGTTACCGGTCGTAGATACAGAGTACCTTAAGGAGATCGATAAGGCTCGCCGTCACCTCCGCTCTCTCATTGCCAACCGGAACTGTGCACCGATCATGCTTCGTCTGGCTTGGCACGACGCTGGCACGTACGATGTGAGTACGAAAACTGGAGGGCCTAATGGATCGATTAGGAACGCGGAGGAGTATTCTCACGGGTCTAACAATGGACTGAAAAAAGCCATTGATTTTTGTGAGGAAGTAAAGTATAAACACCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGTGTTGTTGCTGTTGAGGTCACTGGAGGACCCACTATTGACTTTGTTCCTGGTAGAAAGGATTCGAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCTAAAAAAGGTGCACCGCATCTGCGTGACATCTTTTATAGGATGGGTCTGTCTGACAAAGATATTGTTGCATTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCGGAGAGATCTGGTTTCGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGTGAATCAGAGGGACTATTAAAACTTCCCACGGACAAGGCTTTACTTGAAGATCCTGAATTCCGCCAATATGTGGAATTGTATGCAAAAGATGAAGATGTATTCTTCCAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGCTAAACCAATTGTGAAGGACAGCACAGTATTGGCTCAGGGTGCCGTTGGAGCCGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATACGAAATCCGCAAAAAATCGAAGTAA 990 46.97 ARGGSWPKDELWRSHYQIGSRFLRSSRYPLYCTKQRLSFCCSVMALPVVDTEYLKEIDKARRHLRSLIANRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNAEEYSHGSNNGLKKAIDFCEEVKYKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRQYVELYAKDEDVFFQDYAESHKKLSELGFTPGSAKPIVKDSTVLAQGAVGAAVAAAVVILSYLYEIRKKSK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6658067 6667567 - Cp4.1LG15g06000.1 Cpe15g00587 482045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00587 329 Gene3D - 60 286 - -
Cpe15g00587 329 PRINTS Haem peroxidase superfamily signature 150 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Haem peroxidase superfamily signature 74 88 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Haem peroxidase superfamily signature 132 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 CDD ascorbate_peroxidase 47 289 - -
Cpe15g00587 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Cpe15g00587 329 Gene3D Peroxidase, domain 2 173 279 - -
Cpe15g00587 329 Pfam Peroxidase 63 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PANTHER L-ASCORBATE PEROXIDASE 4, PEROXISOMAL-RELATED 44 329 - -
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 171 188 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 92 102 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 131 149 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 211 235 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 263 287 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 106 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 189 210 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 74 89 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 53 73 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 PRINTS Plant ascorbate peroxidase signature 150 162 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 ProSiteProfiles Plant heme peroxidase family profile. 74 303 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 SUPERFAMILY Heme-dependent peroxidases 53 293 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cpe15g00587 329 ProSitePatterns Peroxidases active site signature. 74 85 IPR019794 GO:0004601
Cpe15g00587 329 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 44 329 IPR044831 GO:0004601|GO:0034599
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00587 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101206941 527.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00581 Cpe-Chr4:6204304 Cpe15g00587 Cpe-Chr15:6658067 0 dispersed
Cpe05g00877 Cpe-Chr5:5784171 Cpe15g00587 Cpe-Chr15:6658067 6.32E-100 dispersed
Cpe10g00676 Cpe-Chr10:3895353 Cpe15g00587 Cpe-Chr15:6658067 1.42E-119 dispersed
Cpe13g00627 Cpe-Chr13:6013921 Cpe15g00587 Cpe-Chr15:6658067 1.91E-72 dispersed
Cpe15g00587 Cpe-Chr15:6658067 Cpe16g00567 Cpe-Chr16:6468411 9.10E-109 dispersed
Cpe15g00587 Cpe-Chr15:6658067 Cpe02g01276 Cpe-Chr2:11402492 1.49E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00587 Cpe_Chr15 FPKM 1.725675 2.980662 2.044521 1.795774 0.511989 0.56812 0.256045 5.434923 3.996796 5.525236