Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00597 ATGGCGAAGCCGGTTCAAATTGAAGTGTGGAATCCTAATGGAAAGTACAGAGTTGTAAGCACCAAGCCTATGCCTGGAACTCGCTGGATCAATCTCTTGATCGAACAAGATTGCCGAGTTGAAATCTGTACCGAGAAGAAGACGATACTCTCGGTGGAGGATATTGTTGCTCTCATCGGCGATAAGTGCGACGGCGTTATTGGACAGTTGACTGAAGATTGGGGAGAGGTGCTGTTTTCTGCATTAAGCAGAGCCGGAGGCAAAGCTTTTAGTAATATGGCTGTTGGTTACAATAATGTAGATGTTAACGCTGCTAATAAGTATGGTATTGCTGTAGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGTTGGCAGCTTCACTTTCTCTTGCAGCTGCAAGAAGGATCGTTGAAGCTGACGAGTTCATGAGGGCAGGCCGCTATGATGGATGGCTTCCAAATTTGTTTGTTGGAAACTTGCTGAAAGGCCAGACTGTTGGTGTGATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGAAATTTTCCTAACTCAATTGTTTATGAGTTTATGGTATAGCACCTGTTTTCCCTTCATGATTTCTTGTTATATTCTTGCAGCCTATGGCGAGTTCCTAAAAGCCAACGGTGAGGTTCCTGTGACATGGAGAAGAGCATCATCCATGGATGAGGTGCTTCGAGAGGCTGATGTGATAAGTCTTCATCCAGTACTGGATAAAACCACATTCCATCTGGTGAACAAAGAAAGTCTTAAAGCCATGAAGAAGGATGCAATTCTCATTAACTGTAGTAGGGGACCCGTGATCGATGAAGCAGCCCTTGTCGAGCATTTAAAAGAGAATCCGATGTTTCGAGTTGGCCTCGATGTCTTCGAGGATGAACCATACATGAAACCTGGGCTTGCTGATATGAAGAATGCGATCATTGTACCTCACATTGCTTCCGCTTCCAAGTGGACTCGTGAAGGAATGGCGACACTCGCTGCTCTTAATGTTCTGGTGTGCAACCTATAA 1047 44.79 MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMEIFLTQLFMSLWYSTCFPFMISCYILAAYGEFLKANGEVPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVEHLKENPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLVCNL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6717855 6720118 + Cp4.1LG15g05930.1 Cpe15g00597 482055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00597 348 PANTHER ZGC:136493 28 344 - -
Cpe15g00597 348 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 229 325 IPR006140 GO:0051287
Cpe15g00597 348 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 189 IPR006140 GO:0051287
Cpe15g00597 348 CDD GDH 16 344 - -
Cpe15g00597 348 Gene3D - 118 324 - -
Cpe15g00597 348 Gene3D - 18 344 - -
Cpe15g00597 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 326 IPR036291 -
Cpe15g00597 348 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Cpe15g00597 348 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 28 344 - -
Cpe15g00597 348 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 343 IPR006139 GO:0016616|GO:0051287
Cpe15g00597 348 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 265 281 IPR029753 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00597 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - csv:101209132 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00597 Cpe-Chr15:6717855 Cpe17g00555 Cpe-Chr17:4581090 7.99E-34 dispersed
Cpe15g00597 Cpe-Chr15:6717855 Cpe04g00596 Cpe-Chr4:6280687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00597 Cpe_Chr15 FPKM 34.479855 34.33147 14.17241 8.494386 14.937692 15.847782 14.673048 8.741256 7.85647 9.765619