Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00604 ATGGGCTTTCAGCGCACAATCAGACGCTTGACAGTAAATCAGAACCCAAATTCCGCACCACAGCGTATCCTCCCAAGGAACTGTGACCCAGCGGGCGGAAGCACCAGCGCCAATCCAGTTATCCTCGTGCTGCGGGTTTTTGGCGCTTGTACTAAGCCACTGGAGGCTGCAGCTGAGACGGTAGTTATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGAAATGAAGTCTGGAGACAAACATCGTAGTCGAAGTTCAAAGTATAAGACTGATGGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACTTGATCATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGGCACAGTAGCGGTAAGGAGTTTAGGGGAAAAGAGGACAGAGAAAAGAATCAGGAAGAGAGGAGCAGTAAGGACAGAGATGTGGACAGAGATAAAGAACGTGTGCACGATCATGATAGACGAGGCAGAGATGGTGAAAAGGACAGGGAAAGAGAACGGTCACATCGAAGTAGAAGTCATTCAGAAAGACATCGCAGTGATCGAGATGAAAGCATTAGACAGAGGACCCGAGATAATGAATTCAGAGAACGAGAAAAAGAGAGAGAGTCTAGAGAGCGAGGCAGGGATGGCAGAAGACATAAGGAGAAAAAGGAAGACGGAACGGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGCTTGAAGGCAACTGAAAGAGATGTGTTCGAATTCTTCTCCAGGGCCGGTAAGGTGCGAGATGTACGCCTCATCATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTAAGTCAACCTGTAATGGTAAAGCCATCTGAAGCTGAGAAGAACCAAGCTCAATCAACTTCTGCTGCTGCTGGACCAGGTGGAGTAATGGGTCCCTACACTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGGCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCATTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGTCCACAGTCACAGATCAGCCTGGACTGCAAGATATCGGAGCAAGTACAGGAGACCTTGACGATGAAGATGGTGTTGGCTTGTCCTTAAATGCTAGTTCTCGAGCATCCCTGATGCAGAAACTGGACCGTACTGGCACTGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAACACAGGCGCTACCATGGCAATGGCGCCAATCCTTGGAGTTGGAACTATCCCTTCCCTGGGTGTTGCTACTTCTTTGGTCTCCGTTCCTGCTTTTCCTGGACTTGGTGCAGCAGGCGTTCAGGTTCCCACTGTTGCTGCTAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTTGGAACCAACTTTTGATATGGATATCAGAGACGACGTGGAAGAGGAATGCTCTAGGAATAGTGCCGGTTTTGTATACTTGAGATTTGCAAATTCAGAGGCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGCGCAACTTTCATGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG 1941 46.88 MGFQRTIRRLTVNQNPNSAPQRILPRNCDPAGGSTSANPVILVLRVFGACTKPLEAAAETVVMDFDEYDYLEKTVENPEGQKVKETANGGDAEMKSGDKHRSRSSKYKTDGKDDGEHRSKRSKSEDESLDHDRHRDRTSSRHRSRSRDRDRDRHSSGKEFRGKEDREKNQEERSSKDRDVDRDKERVHDHDRRGRDGEKDRERERSHRSRSHSERHRSDRDESIRQRTRDNEFREREKERESRERGRDGRRHKEKKEDGTEPEADPERDQRTVFAYQISLKATERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQAQSTSAAAGPGGVMGPYTGGARRLYVGNLHPNITEDNLRQVFGAFGIVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQPGLQDIGASTGDLDDEDGVGLSLNASSRASLMQKLDRTGTASSIAGSLGTHVVNNTGATMAMAPILGVGTIPSLGVATSLVSVPAFPGLGAAGVQVPTVAANLLGVGTPSECLLLKNMFDPTAELEPTFDMDIRDDVEEECSRNSAGFVYLRFANSEAAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6753948 6765218 - Cp4.1LG15g06020.1 Cpe15g00604 482062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00604 646 SUPERFAMILY RNA-binding domain, RBD 264 371 IPR035979 GO:0003676
Cpe15g00604 646 SUPERFAMILY RNA-binding domain, RBD 374 632 IPR035979 GO:0003676
Cpe15g00604 646 MobiDBLite consensus disorder prediction 76 270 - -
Cpe15g00604 646 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 63 642 - -
Cpe15g00604 646 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 465 581 IPR029123 -
Cpe15g00604 646 Gene3D - 559 646 IPR012677 -
Cpe15g00604 646 TIGRFAM SF-CC1: splicing factor, CC1-like family 165 644 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cpe15g00604 646 CDD RRM3_RBM39_like 562 634 - -
Cpe15g00604 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 348 IPR000504 GO:0003723
Cpe15g00604 646 CDD RRM1_RBM39_like 272 344 - -
Cpe15g00604 646 PANTHER CC1-LIKE SPLICING FACTOR 63 642 - -
Cpe15g00604 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 339 IPR000504 GO:0003723
Cpe15g00604 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 444 IPR000504 GO:0003723
Cpe15g00604 646 MobiDBLite consensus disorder prediction 15 34 - -
Cpe15g00604 646 SMART rrm1_1 564 631 IPR000504 GO:0003723
Cpe15g00604 646 SMART rrm1_1 375 447 IPR000504 GO:0003723
Cpe15g00604 646 SMART rrm1_1 272 344 IPR000504 GO:0003723
Cpe15g00604 646 Gene3D - 206 357 IPR012677 -
Cpe15g00604 646 Gene3D - 358 454 IPR012677 -
Cpe15g00604 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 451 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00604 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 880.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01554 Cpe-Chr2:13185649 Cpe15g00604 Cpe-Chr15:6753948 1.34E-12 dispersed
Cpe03g00833 Cpe-Chr3:5237987 Cpe15g00604 Cpe-Chr15:6753948 1.27E-13 dispersed
Cpe08g00411 Cpe-Chr8:2639557 Cpe15g00604 Cpe-Chr15:6753948 1.45E-08 dispersed
Cpe10g00361 Cpe-Chr10:2126900 Cpe15g00604 Cpe-Chr15:6753948 6.93E-177 dispersed
Cpe15g00604 Cpe-Chr15:6753948 Cpe04g00290 Cpe-Chr4:3623251 2.95E-07 dispersed
Cpe15g00604 Cpe-Chr15:6753948 Cpe19g00550 Cpe-Chr19:4649694 3.56E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g184 . . . . . . . . Cmo19g00761 . . . . . . . Cpe15g00604 Bhi05g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00295 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01213 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00604 Cpe_Chr15 FPKM 9.307272 10.52509 13.534616 14.133192 14.353208 15.6532 15.840082 11.359235 11.340545 11.402783