Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00607 ATGGGTATGGAACAAAACAATCATGATGCAGAGGAGGGAACGCTGGAGATTGGCATGGAATATAGAACAGTCTCGGGAGTTGCTGGTCCTTTGGTTATTCTGGACAAAGTCAAGGGACCTAAGTTTCAGGAGATTGTTAATATTCGTCTCGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTATTTGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACTGGAGAGGTTTTGAAAACTCCAGTCTCTTTGGACATGCTCGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGACAATGGTCCTCCTATCTTGCCTGAGGCTTATTTGGACATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAAGAGATGATACAGACTGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCTCTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGCCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCCAACGATCTTCTCGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCTGCTATGGGTGTTAACATGGAGACAGCTCAATTTTTCAAACGTGATTTTGAGGAAAATGGTTCTATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGACCCTACAATCGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGCGGGAAGCATGTTCTCGTCATATTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCAGCACGAGAGGAAGTACCCGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATTTATGAGCGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACCCCCGATCTTACTGGCTATATTACCGAGGGACAGATCTACATCGATAGGCAGCTCTACAACAGACAGATATACCCACCAATCAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCTCTCAAGGAGCTTACGATACTCGAAATATTTTCCAATCGCTTGATCTGGCTTGGACACTGCTTCGTATTTTCCCTCGCGAACTTCTGCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCCGAGAATCTGCAAATTAA 1467 44.04 MGMEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6781831 6786379 + Cp4.1LG15g06070.1 Cpe15g00607 482065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00607 488 CDD V_A-ATPase_B 92 379 - -
Cpe15g00607 488 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Cpe15g00607 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 383 IPR027417 -
Cpe15g00607 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Cpe15g00607 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Cpe15g00607 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 488 - -
Cpe15g00607 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 377 IPR000194 GO:0005524
Cpe15g00607 488 Hamap V-type ATP synthase beta chain [atpB]. 18 486 IPR022879 -
Cpe15g00607 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Cpe15g00607 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Cpe15g00607 488 Gene3D - 29 488 - -
Cpe15g00607 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 488 IPR022879 -
Cpe15g00607 488 PIRSF V-ATPsynth_beta/V-ATPase_B 11 488 IPR022879 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00605 Cpe15g00607 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00535 Cpe-Chr12:5497513 Cpe15g00607 Cpe-Chr15:6781831 9.49E-21 dispersed
Cpe15g00607 Cpe-Chr15:6781831 Cpe17g00407 Cpe-Chr17:3036883 2.90E-21 dispersed
Cpe15g00607 Cpe-Chr15:6781831 Cpe04g00605 Cpe-Chr4:6326037 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00607 K02147 - csv:101211838 961.829