Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00612 ATGGATTCCAAAATGAACAAGAGGGCCAGATTTGATGATTCCGGCAAGGCAGTGGTTAATTTCTTGAAGCGGGAGGTCGGCGAGATTTCCACTCGCAGTTTTGCCAATCGTCTTGGTGCGCTGGAGGATTTCGTGCTCCGACTTGGTCTTCTCAGGAAGTTGGAAAGGCACAAAGGTTGTGTCAACACCGTGAGCTTTAATGCTGCTGGTGACGTTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAGCCGGGAAGGTCAAGATCTCTTTTCAATCTGGTCATAATAACAATGTTTTTCAAGCAAAATTCATGCCTTACACGGATGACCGAAGCATTGTGACTTGTGCTGCGGATGGGCAGGTGAGACATGCTCAGGTTTTGAATGGTGGGCGTGTAGAAACTTCACTACTTGGCAGTCATCAAGGGCGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTATATTTTCTATACATGTGGTGAAGATGGATTGGTGCAACGTTTTGATCTAAGAACTGGGGCTGCCGTTGAGCTGTTCACTTGCCAATCAGTTGGCAATAGGGCAGGTTACATGTCAACGGTTCAGCTAAATGCAATTGCTATGGACCCTAGAAATCCAAATCTCGTTGTTGTTGCTGGTTCAGACGAGTATGCACGGTTGTATGATATTCGCAAATGTGGGGGGGAAGGGTCGACTGATTCTGGTCAACCTGCAGACTGCTATTGCCCCCCTCACTTGATTGGTGATGAGCACGTGGGAATAACAGGTCTAGCCTTCTCAGAGCTGAGTGAGCTCCTTGTCTCATACAATGATGAATATATTTATCTTTTCAATAGGGACATGGGCTTGGGTCCAAACCCAAATGCAGTATCTCCAGTATCTCTGAGTAGTGATACAAGTGAAATGGGAGCTGAAAAAGTTGTGAATTGTACTCCACAAGTTTATAAAGGACATAGAAACTGTGAGACAGTTAAAGGTGTCAATTTTTTTGGACCCAAATGCGAGTATGTGATCAGTGGTTCTGATTGTGGCAGAATTTTTATATGGAGGAAAAAGGGTGGAGAGCTAATCCGAGTCATGAAAGCCGACGAGGATGTTGTGAACTGCATCGAGCCCCATCCTCACATGACCATGCTTGCTAGTAGTGGAATTGAAAGTGACGTCAAGATATGGACTCCAAATTCCCGCCACAGGGCTACTCTTCCTGAGAAAATTGAACAGAATCCAAAGCCTAGAGGATGGATGCACCGGTTAGCGTTACCGGAGGAGGTGATGATGCAACTGTTTTCACTGCGAAGACGACGGAATTCAATCCCTGAAAGAGGAAGAGAAAACTCTACCCCAACCCCAAATAGGGATATCTTAGAGTTGATAATGACATTCAGCAATTCCAACGGTGATGGCTCTTCAGATTACAACGCTGGTGATGCTTCTGAAGATTAG 1464 45.9 MDSKMNKRARFDDSGKAVVNFLKREVGEISTRSFANRLGALEDFVLRLGLLRKLERHKGCVNTVSFNAAGDVLVSGSDDRRVILWNWEAGKVKISFQSGHNNNVFQAKFMPYTDDRSIVTCAADGQVRHAQVLNGGRVETSLLGSHQGRAHKLAIEPGSPYIFYTCGEDGLVQRFDLRTGAAVELFTCQSVGNRAGYMSTVQLNAIAMDPRNPNLVVVAGSDEYARLYDIRKCGGEGSTDSGQPADCYCPPHLIGDEHVGITGLAFSELSELLVSYNDEYIYLFNRDMGLGPNPNAVSPVSLSSDTSEMGAEKVVNCTPQVYKGHRNCETVKGVNFFGPKCEYVISGSDCGRIFIWRKKGGELIRVMKADEDVVNCIEPHPHMTMLASSGIESDVKIWTPNSRHRATLPEKIEQNPKPRGWMHRLALPEEVMMQLFSLRRRRNSIPERGRENSTPTPNRDILELIMTFSNSNGDGSSDYNAGDASED 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6810584 6817523 - Cp4.1LG15g06120.1 Cpe15g00612 482070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00612 487 SUPERFAMILY WD40 repeat-like 46 398 IPR036322 GO:0005515
Cpe15g00612 487 SMART WD40_4 360 399 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 187 229 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 47 86 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 136 176 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 89 131 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 246 285 IPR001680 GO:0005515
Cpe15g00612 487 SMART WD40_4 315 357 IPR001680 GO:0005515
Cpe15g00612 487 Gene3D - 46 401 IPR015943 GO:0005515
Cpe15g00612 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 86 - -
Cpe15g00612 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Cpe15g00612 487 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 12 448 IPR045151 -
Cpe15g00612 487 MobiDBLite consensus disorder prediction 468 487 - -
Cpe15g00612 487 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Cpe15g00612 487 Pfam WD domain, G-beta repeat 320 356 IPR001680 GO:0005515
Cpe15g00612 487 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 12 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00612 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - csv:101212571 823.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00612 Cpe-Chr15:6810584 Cpe16g00563 Cpe-Chr16:6425266 1.57E-145 dispersed
Cpe15g00612 Cpe-Chr15:6810584 Cpe06g00448 Cpe-Chr6:2596156 8.65E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00612 Cpe_Chr15 FPKM 17.122221 21.132429 23.081196 23.361223 24.499571 23.672783 24.233665 29.72261 32.717514 34.133377