Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00613 ATGGTTATGGAGGATAACGAGAGCTGTGGAAGTAGAGCACATGACTCGTTGTCGCCGGCGCAGAGTCGGCAACAGAGACAGAAGTTTGAGGTATACAATGAGGTTCTACGGCGTTTGAAGGATTTAAACAACGAGGAGGCTAATCAGCCTGGTTTTGACGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCATGATCCTGCAAATCGACCTGCAATTGAAGTCCGCCTAGTGCAGGTCCAGGCCATTTCTGATGGGAATTCCGCTGACTTTGCTGATTCATGTTCTGTAAAAGACACTGACCATAATTCTGCAAATTGCTTGAGTAAACAGAGCATACATCCACCACCTGCCTTTGGGTCATCTCCCAACCTTGAGGCCTTGGCCCTTGAAGCTAATAACGCTCAGGACCTGGAGGTTGATCATTCTGTACATGCCAGAACACAGTTTTCCCGGCCGATGCATGAAATAACTTTCTCTGCAGATGATAAGCCGAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACTGTTGACGGTTACTCATTGGACGTTTTTGTAGTTGATGGGTGGCCCTATGAGGAAACAGAACGATTGAAGACTGCATTAGAGAAGGAAGTCTCGCAGGTTGAGAAGCGGGCTTGGCCAAATCATAAATCCTCGTCACCTGTTGGGGGACAAGATTTAACAACTAAATGTGAGCCTGATCGAGTGGAAATTCCCACAGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTCGAGCATAAAGTTGCGTCAGGTTCATATGGGGATCTGTATAAAGGTACATATTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATTCAGATATGCAAAGTGAGTTTGCCCAGGAGGTATATATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGTACGAAGCCCCCAAGCTTGTGCATTGTTACAGAGTTTATGTCTGGTGGTAGTGTATATGATTATCTACATAAACAAAAGGGAACCTTTAGGCTTCCAACTTTGCTCAAGGTAGCCATCGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTTAAGGCTGCCAATCTTCTGATGGATGAAAATGAAGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACTGGAAAGCTGCCTTATGAATTCCTAACCCCATTACAAGCCGCAGTTGGAGTGGTTCAAAAGGGTTTACGACCTACTATTCCAAAGCACACTAATCCCAAGCTGGCTGAGTTGCTAGAAAAATGTTGGCAGCAAGATCCATCATTGAGGCCGGACTTCTGTGAAATTATCGACATATTGTTGCAGATAACTAAGGAAGTAAGTTCTCGATGA 1563 43.63 MVMEDNESCGSRAHDSLSPAQSRQQRQKFEVYNEVLRRLKDLNNEEANQPGFDDELWVHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAISDGNSADFADSCSVKDTDHNSANCLSKQSIHPPPAFGSSPNLEALALEANNAQDLEVDHSVHARTQFSRPMHEITFSADDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVSQVEKRAWPNHKSSSPVGGQDLTTKCEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPTLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPSLRPDFCEIIDILLQITKEVSSR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6819267 6827022 - Cp4.1LG15g06130.1 Cpe15g00613 482071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00613 520 CDD STKc_MAP3K-like 299 510 - -
Cpe15g00613 520 Gene3D Phosphorylase Kinase; domain 1 283 371 - -
Cpe15g00613 520 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 426 518 - -
Cpe15g00613 520 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 15 424 - -
Cpe15g00613 520 MobiDBLite consensus disorder prediction 251 270 - -
Cpe15g00613 520 SMART serkin_6 293 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00613 520 SUPERFAMILY Protein kinase-like (PK-like) 279 510 IPR011009 -
Cpe15g00613 520 Pfam Protein tyrosine and serine/threonine kinase 293 428 IPR001245 GO:0004672|GO:0006468
Cpe15g00613 520 Gene3D Transferase(Phosphotransferase) domain 1 427 520 - -
Cpe15g00613 520 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 426 518 - -
Cpe15g00613 520 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 424 - -
Cpe15g00613 520 SUPERFAMILY ACT-like 179 247 IPR045865 -
Cpe15g00613 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Cpe15g00613 520 CDD ACT_TyrKc 179 245 - -
Cpe15g00613 520 Coils Coil 231 251 - -
Cpe15g00613 520 Gene3D Transferase(Phosphotransferase) domain 1 372 426 - -
Cpe15g00613 520 MobiDBLite consensus disorder prediction 1 26 - -
Cpe15g00613 520 ProSiteProfiles ACT domain profile. 181 253 IPR002912 -
Cpe15g00613 520 Gene3D - 178 251 - -
Cpe15g00613 520 ProSiteProfiles Protein kinase domain profile. 293 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00613 520 MobiDBLite consensus disorder prediction 12 26 - -
Cpe15g00613 520 MobiDBLite consensus disorder prediction 252 266 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00611 Cpe15g00613 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01301 Cpe-Chr8:9370950 Cpe15g00613 Cpe-Chr15:6819267 0 dispersed
Cpe14g01045 Cpe-Chr14:8766023 Cpe15g00613 Cpe-Chr15:6819267 0 dispersed
Cpe15g00613 Cpe-Chr15:6819267 Cpe07g00777 Cpe-Chr7:6873917 2.67E-62 dispersed
Cpe15g00613 Cpe-Chr15:6819267 Cpe02g00053 Cpe-Chr2:277513 0 wgd
Cpe15g00613 Cpe-Chr15:6819267 Cpe04g00611 Cpe-Chr4:6366608 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62860 PF07714 PK_Tyr_Ser-Thr 8.80E-38 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00613 - - csv:101213048 962.6