Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00616 ATGGAAATTAGCCACAAAAAATGTTCATCCCAAAAGGAAGAAGATGGGCAAGCCATAACCCAGATGTGGAAATACACATTTGGGTTCACCGAATTGGCTGCAATAAAATGCATCATAGACCTTAAAATTGCAGACATTATCGAAGGTAATGGAAGCCCCATGACATTGGCAGAGCTATCCACTACTTTAAACTGTTCTTCCACCCTCCTTTACCGCATCATGAGGTTCCTCGTTCATCGTGGAATTTTCAGGGAAGAAACCACCAATGAGAGCCATATAGGCTATGCGCACACACCCTTGTCTCGCTTGCTTGCCACCAACGTTGAGAACAGCATGGCTCCCATGATTCTGTTTAAAATTAGCCCTGTGATGCTTGCACCATGGCAGTGTTTGAGCGCCCACTTAAAGAACAGTGACACTTCACCATTTGAGATTGCTAATGGGAAGGATATATGGAGTTATGCTGCAGCAAATCCGGAGTACAATGTGCTGTGCAATGAGGCCATGGCTTGTTCTGCTAGGGTCACTACTTCGGCTATACTTGAAGGGTGTGGTGATATTTTTGATGGAGTTGAATGTTTGGTCGATGTGGGTGGAGGAAATGGTAGCACTTTGAGTATTCTAGTCAAGGCTTGTCCATGGATTAGAGCATGTAGCTGGTGA 663 44.8 MEISHKKCSSQKEEDGQAITQMWKYTFGFTELAAIKCIIDLKIADIIEGNGSPMTLAELSTTLNCSSTLLYRIMRFLVHRGIFREETTNESHIGYAHTPLSRLLATNVENSMAPMILFKISPVMLAPWQCLSAHLKNSDTSPFEIANGKDIWSYAAANPEYNVLCNEAMACSARVTTSAILEGCGDIFDGVECLVDVGGGNGSTLSILVKACPWIRACSW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6902643 6903364 + Cp4.1LG15g06170.1 Cpe15g00616 482074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00616 220 Pfam Dimerisation domain 34 78 IPR012967 GO:0046983
Cpe15g00616 220 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 220 IPR016461 GO:0008168
Cpe15g00616 220 PANTHER O-METHYLTRANSFERASE 10 217 IPR016461 GO:0008168
Cpe15g00616 220 SUPERFAMILY Winged helix DNA-binding domain 12 107 IPR036390 -
Cpe15g00616 220 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 216 IPR029063 -
Cpe15g00616 220 Gene3D Vaccinia Virus protein VP39 105 219 IPR029063 -
Cpe15g00616 220 Gene3D - 4 104 IPR036388 -
Cpe15g00616 220 Pfam O-methyltransferase domain 128 218 IPR001077 GO:0008171
Cpe15g00616 220 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 10 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00616 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101222999 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00615 Cpe-Chr4:6394727 Cpe15g00616 Cpe-Chr15:6902643 2.45E-96 dispersed
Cpe15g00616 Cpe-Chr15:6902643 Cpe05g01486 Cpe-Chr5:10266082 7.86E-36 dispersed
Cpe15g00615 Cpe-Chr15:6843429 Cpe15g00616 Cpe-Chr15:6902643 3.62E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00616 Cpe_Chr15 FPKM 0.364005 0.943847 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0