Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00628 ATGGATCCGCATATTATCCTTGTTGCTTGCTTTCTCACTTCTCACCGCTCTCATCGAAAAACAATGGCTTTTTATGTCGGTCTTCTCTTCTTTCTCGTCTCTTCCGCCGCTGCTGCTTGTGATCGTTGTGTTCATCAATCCAAATCTGCTTATTATTACGATGATACACCTATTCAACATGGGGCGTGTGGATATGGCCCTTTGGCATTTGAATTGTCCAATGGGATACCTTGCACGTACAAAAACAAGAATTTGATGGTACGAGTAGAGGAATGGAGCCAAAAGCCATACTACTTGGCACTTAAGTTGGTATACCAAGGTGGGCAGACAGAAATAAAGGGCATAGAAATAGCTGAGGTTGGCTCTGATAATTGGGAATCCATGAAGAGAAACTATGGTGCCATTTGGGATACCAACAAGGTTCTTGAGGGAGCATTGCAGTTGAAAATAGTTGTAGCTTCAAGGTACAACAATGAGAACATATATTGGGCAACCTACGACCTTCCCGATGATTGGAAGAATGGAGAGATGTACGATACTGGAGTTCAAATCGATGATATTGTCAACCAAAAATGTCCACCAAAGCAATGTGGTGATTTGCCATGGAATCCACAGCGGCCTACTACTCAGCCAATTCACCTACTTCAAGTGAGATGCAAGGATAGAAGATTGTGCACAACAAAAGGAACCAAAGTGGTTTTGACAGATCAAAATCAAGACAACAGGACAGGTTTTGTTCTTAGTAAGAAAGGCTTCTCAGCCATGGCTCGAAAGGGTAACATCCAAAAGCTTTTAAACCTCACGAGCATCGATGTAGAATACAAGAGGATACCATGTGACTACAAAAATAAAAATTTGACCATTTTTATTCAAGATTGGAGCAAAACAAACAAAGTGCCTGAAGGAGCGTTGCAGCTATGGATGAAGATCGTAACTTCAGGGTTCAAAGAGAAGTGGATAATGGCCAACAACATCATTCCTGCTGATTGGAAAAGTGGACTCACTTATGATATGGGAACTCAATTCAAGGATATTGCTCAAGAATCTTGCCCTCCATGGGAATGTGCATCTTCTTCTTCCTCCTCGTCTCGTCTGCTACTGCTTGTGATCGTTGTATTCATCGATCCAAGGCTACTCATTACTATGGAGATTCACCAACTTCATATGGAGGAGCCTGTGGTTATGGAGATTTGGCATTGGAATTTACCAATGGCTACTTCTCAGCTGCTATCCCTTCTCTTTACAAACAAGGAGCTGGGTGTGGTGCATGTGAGATGTAAAGACAAAAGATTATGCAATGGAGCAGGGACGAAAGTGGTATTGACTGATCAAAATTATGATACGAGAGCCGATTTTGTTCTTAGTAGAAAAGCTTTTTCGACCATGGCTTTGAAAGGAAAAGGTCAAGAACTTTTGAACACTGGAATTGTGGACGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAACTTGGCCGTTCGAGTTGAAGAATCGAGTTATAACCCGAACTATTTAGCCATTAAATTGTTGTACCAAGGTGGCCAAACTGAGATAGTGGCGGTTGACATAGCTAAGGTTGGTTCATACGATTGGGTGAGCTTGAGCAGGAGCTACGGAGCTGTGTGGGATACCAATAAAGTACCGAGAGGAGCACTTCAAATGAGGATGGTAGTGACTTCAGGTTACGATGGAAAACGGTTATGGGCAAAATATGTGCTTCCTGTCGATTGGAAAACTGGAGTCATTTACGATACTGGAGTTCAAATCGACGATATTGCCAAAGAGGGTTGCCCTGCATCGGAGTGTGATGGAGGCGCTTGTGGGTATGGAAATTTGGGGTTGGAGATGTCCCAAGGCTACTTTGCAGCTGCTGTGCCTTCTCTTTTTCGAGAAGGGATGGGTTGTGGTGCATGTTATCAGGTAAGATGCAAGAATGCAACACTATGCAACACAATGGGGACTAAAGTAACTTTGACAGATAAAAATTCTGACAACAGAACAGATTTTGTTGTCAGTAAAAAAGCTTTTACTGCTATGGCTTTAAAAGGCAAATCCCAAGAACTTTTGAAAACTGGAATTGTTGATATGGAATACAAGAGGATACCTTGTGAATACAACAAAAATTTATCAATACAAGTGGTGGAATGGAGCCACAAACCATACTATATGGCTATTAAACTCCTCTACCAAGGAGGCCAAACCGACATAACCGCCACCAATAATGTGCCTGGAGGGGCCATTAAGCTAGTGGTGATCGTAGTTTCTGGGTATAACAATGGGAGGGGGATCGTGATAGATTATGCACTGCCTGCTGGTTGGAAAAATGGAGAAATTTACGATACTGGGATTCAAATCAAGGATATTGCTTCTGAATATTGCAATCCTTGGCGGCTAGCCATCTTTACGATTCTCCAACTACATTTCTCTAATGGCTTCTTTGCAGCTGCGGTGCCTTCCCTTTACAGACAAGGAGCTGGGTGTGGCGCTTGCTATCAGGTGAGATGCAAAAATAGAAGGCTTTGTAACACATTAGGGACTAAAGTGGTGTTGACAGATCAAAACAATGACAATGCAACAGACCTTGTTCTTAGTAAAAGAGCTTTCTTTACCATGGCTCTCAATGTCCAAGTGGAAGAACCAAGTTCTAACCCATATTACCTAGCTATCAAATTCTTATACCAAGGTGGGCAAACAGACATGGTTGCCGTGGACATAGCTGAAGTGGGTACCTCAGGTTGGAGCCATATGAAGAGAAATTATGGAGCTGTTTGGGAAACAAACAACATCCCTGAAGGAGCATTACAATTGAGGATGGTGGTGACTTCAGGCTACGATGGAAAATGGGTTTGGGCAAAATCAGTGCTTCCTGCTGATTGGAAAAGCGGAGGCATTTACGATACTGGAGTTCAAATCAACGACGTTGCTAAAGAGAGTTGCCCGCCTTGGCAATGTGGTGATAAGCCATGGAAATGA 2979 42.56 MDPHIILVACFLTSHRSHRKTMAFYVGLLFFLVSSAAAACDRCVHQSKSAYYYDDTPIQHGACGYGPLAFELSNGIPCTYKNKNLMVRVEEWSQKPYYLALKLVYQGGQTEIKGIEIAEVGSDNWESMKRNYGAIWDTNKVLEGALQLKIVVASRYNNENIYWATYDLPDDWKNGEMYDTGVQIDDIVNQKCPPKQCGDLPWNPQRPTTQPIHLLQVRCKDRRLCTTKGTKVVLTDQNQDNRTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKRIPCDYKNKNLTIFIQDWSKTNKVPEGALQLWMKIVTSGFKEKWIMANNIIPADWKSGLTYDMGTQFKDIAQESCPPWECASSSSSSSRLLLLVIVVFIDPRLLITMEIHQLHMEEPVVMEIWHWNLPMATSQLLSLLFTNKELGVVHVRCKDKRLCNGAGTKVVLTDQNYDTRADFVLSRKAFSTMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVDIAKVGSYDWVSLSRSYGAVWDTNKVPRGALQMRMVVTSGYDGKRLWAKYVLPVDWKTGVIYDTGVQIDDIAKEGCPASECDGGACGYGNLGLEMSQGYFAAAVPSLFREGMGCGACYQVRCKNATLCNTMGTKVTLTDKNSDNRTDFVVSKKAFTAMALKGKSQELLKTGIVDMEYKRIPCEYNKNLSIQVVEWSHKPYYMAIKLLYQGGQTDITATNNVPGGAIKLVVIVVSGYNNGRGIVIDYALPAGWKNGEIYDTGIQIKDIASEYCNPWRLAIFTILQLHFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTLGTKVVLTDQNNDNATDLVLSKRAFFTMALNVQVEEPSSNPYYLAIKFLYQGGQTDMVAVDIAEVGTSGWSHMKRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGGIYDTGVQINDVAKESCPPWQCGDKPWK 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6998806 7019842 + Cp4.1LG15g06260.1 Cpe15g00628 482086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00628 992 SUPERFAMILY Barwin-like endoglucanases 215 283 IPR036908 -
Cpe15g00628 992 PRINTS Major pollen allergen Lol pI signature 512 527 IPR005795 GO:0005576|GO:0019953
Cpe15g00628 992 PRINTS Major pollen allergen Lol pI signature 563 580 IPR005795 GO:0005576|GO:0019953
Cpe15g00628 992 PRINTS Major pollen allergen Lol pI signature 496 511 IPR005795 GO:0005576|GO:0019953
Cpe15g00628 992 PRINTS Major pollen allergen Lol pI signature 463 478 IPR005795 GO:0005576|GO:0019953
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 602 741 - -
Cpe15g00628 992 SUPERFAMILY PHL pollen allergen 491 586 IPR036749 -
Cpe15g00628 992 SUPERFAMILY Barwin-like endoglucanases 603 709 IPR036908 -
Cpe15g00628 992 PRINTS Expansin/Lol pI family signature 605 623 IPR007118 GO:0005576
Cpe15g00628 992 PRINTS Expansin/Lol pI family signature 693 709 IPR007118 GO:0005576
Cpe15g00628 992 PRINTS Expansin/Lol pI family signature 627 645 IPR007118 GO:0005576
Cpe15g00628 992 Gene3D - 706 744 IPR036749 -
Cpe15g00628 992 PANTHER EXPANSIN-B3 76 199 - -
Cpe15g00628 992 PANTHER EXPANSIN-B3 875 987 - -
Cpe15g00628 992 SUPERFAMILY PHL pollen allergen 878 968 IPR036749 -
Cpe15g00628 992 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 423 491 IPR007112 -
Cpe15g00628 992 PANTHER EXPANSIN-B3 215 295 - -
Cpe15g00628 992 PANTHER EXPANSIN-B3 806 875 - -
Cpe15g00628 992 PANTHER EXPANSIN-B3 741 798 - -
Cpe15g00628 992 SUPERFAMILY Barwin-like endoglucanases 422 490 IPR036908 -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 215 295 - -
Cpe15g00628 992 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 505 587 IPR007117 -
Cpe15g00628 992 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 215 284 IPR007112 -
Cpe15g00628 992 PANTHER EXPANSIN-B3 28 75 - -
Cpe15g00628 992 Gene3D - 416 486 IPR036908 -
Cpe15g00628 992 Gene3D - 212 275 IPR036908 -
Cpe15g00628 992 Gene3D - 594 705 IPR036908 -
Cpe15g00628 992 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 792 898 IPR007112 -
Cpe15g00628 992 PANTHER EXPANSIN-B3 293 356 - -
Cpe15g00628 992 PANTHER EXPANSIN-B3 423 604 - -
Cpe15g00628 992 SUPERFAMILY PHL pollen allergen 83 179 IPR036749 -
Cpe15g00628 992 SMART dpbb_1 816 885 IPR007112 -
Cpe15g00628 992 SMART dpbb_1 624 700 IPR007112 -
Cpe15g00628 992 Pfam Expansin C-terminal domain 494 576 IPR007117 -
Cpe15g00628 992 Pfam Expansin C-terminal domain 86 154 IPR007117 -
Cpe15g00628 992 Pfam Expansin C-terminal domain 877 958 IPR007117 -
Cpe15g00628 992 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 97 180 IPR007117 -
Cpe15g00628 992 SUPERFAMILY Barwin-like endoglucanases 809 876 IPR036908 -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 76 199 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 875 987 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 806 875 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 741 798 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 293 356 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 423 604 - -
Cpe15g00628 992 PANTHER EXPANSIN-LIKE A1-RELATED 28 75 - -
Cpe15g00628 992 Gene3D - 488 591 IPR036749 -
Cpe15g00628 992 Gene3D - 872 974 IPR036749 -
Cpe15g00628 992 Gene3D - 276 343 IPR036749 -
Cpe15g00628 992 Gene3D - 80 184 IPR036749 -
Cpe15g00628 992 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 887 969 IPR007117 -
Cpe15g00628 992 Pfam Lytic transglycolase 625 700 IPR009009 -
Cpe15g00628 992 Pfam Lytic transglycolase 817 875 IPR009009 -
Cpe15g00628 992 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 606 710 IPR007112 -
Cpe15g00628 992 PANTHER EXPANSIN-B3 602 741 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00336 Cpe-Chr15:4557478 Cpe15g00628 Cpe-Chr15:6998806 1.16E-13 dispersed
Cpe15g00628 Cpe-Chr15:6998806 Cpe15g00630 Cpe-Chr15:7023144 1.57E-06 dispersed
Cpe15g00628 Cpe-Chr15:6998806 Cpe15g00629 Cpe-Chr15:7008098 7.67E-32 tandem
Cpe15g00628 Cpe-Chr15:6998806 Cpe04g00620 Cpe-Chr4:6412951 6.23E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00628 - - csv:101209873 352.829