Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00629 ATGGCTTGGTTTCTTGGCTCTCTCTTTCTCGTTTTCATATCTTCTGCTACCGCTTGTGATCGTTGTGTTTTTCAATCTAAAGCTAGTCACCTTTATGAATCACCTACTACATATGGGGGAGCATGTGGTTATGGCAACTTGGCGTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTCTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAACACGGTAGGAACCAAGGTGGTACTCACGGATCAAAATAATGACAATGCAACAGACCTTGTTCTTAGTCAAAGAGCATTCTTTACCATGGCTCTCAATGGTAGAAATTTGTTGGTGCGAGTGGAAGAATCAAGCTACAATCCATTCAAGCTGGCTATTAAGTTCTTCTACCAAGGTGGCCAAACAGACATGATTGCTGTGGACGTAGCTCAAGTTGGAACCTCTGATTGGAGCCATATGAAGAGAAGCTATGGCGCTGTTTGGGAGACAGACAACGTTCCCGAGGGCGCACTGCAGTTGAGAATGGTGGTCACTTCAGGATATGATGGGAAATGGGTTTGGGCGAAGTCTGTGCTTCCTGCTAATTGGGGAGTTGGAGCCATCTTCAACACTGGTGTTCAAATCAACGACATTGCCAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATGGCCAATGGAAATAA 717 45.33 MAWFLGSLFLVFISSATACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNATDLVLSQRAFFTMALNGRNLLVRVEESSYNPFKLAIKFFYQGGQTDMIAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIFNTGVQINDIAKESCPPWQCGDGQWK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7008098 7010527 - Cp4.1LG15g06280.1 Cpe15g00629 482087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00629 238 Pfam Expansin C-terminal domain 123 204 IPR007117 -
Cpe15g00629 238 Gene3D - 15 123 IPR036908 -
Cpe15g00629 238 SUPERFAMILY PHL pollen allergen 119 214 IPR036749 -
Cpe15g00629 238 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Cpe15g00629 238 PANTHER EXPANSIN-LIKE A1-RELATED 7 119 - -
Cpe15g00629 238 PANTHER EXPANSIN-LIKE A1-RELATED 118 233 - -
Cpe15g00629 238 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 133 215 IPR007117 -
Cpe15g00629 238 Gene3D - 124 219 IPR036749 -
Cpe15g00629 238 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cpe15g00629 238 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cpe15g00629 238 Pfam Lytic transglycolase 58 117 IPR009009 -
Cpe15g00629 238 SUPERFAMILY Barwin-like endoglucanases 10 120 IPR036908 -
Cpe15g00629 238 PANTHER EXPANSIN-B3 118 233 - -
Cpe15g00629 238 PANTHER EXPANSIN-B3 7 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00629 Cpe-Chr15:7008098 Cpe03g01834 Cpe-Chr3:13675469 7.45E-21 dispersed
Cpe15g00628 Cpe-Chr15:6998806 Cpe15g00629 Cpe-Chr15:7008098 7.67E-32 tandem
Cpe15g00629 Cpe-Chr15:7008098 Cpe15g00630 Cpe-Chr15:7023144 4.14E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00629 - - csv:101209628 451.055