Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00643 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCCTACTTTCGACGTGCCGATTTGGATCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTTCCTTCTTTCAAGGCTCTGGATTGCCCAAACCGGTTCTTTTTCAGATTTGGGCGCTTTCAGACCCTAGACAGATTGGCTTCCTCGGTCGGGCGGAGTTTTATAATGCCCTTAGGCTGGTCACCGTAGCACAGAGTAAGAGGGAATTAACTCCTGATATTGTGAAAGCAGCGTTGTTTAGCCCAGCTGCATCCAAAATACCAGCACCACAAATAAATTTCAATACTCAGCCTGCACCTCAGTTCAATTCTACTGCACCAGTATCTACACCTCTGAGTGGCATTGGTACTCCTACGCCCTCCCAAAGTTCTGGGTTGGAATTACAGGTTCCACGAAACGTCACTACGAACGTTCCGCTGGTTTCTTCTAGAGAGAGTCAGTTAGTTAGGCCTCCGTTGGCAACTTCAAATTCTGCTTTCCGTCCAGCGCAGGGATTTTCAGGAGTCAGCACTGTCTCGGGGCCACCTCCGACAAATTCAATCATCTCAAATGATTGGGTTAGTGAACGTGCCAGTGGAACTCAGGGGACACCCTTGCAACCTCCGAACAGAGGAGTCAGTCCTGCTGGAATGCAGGTCGGATTTGGCCAATCAAGTGCTGGACTAACAACTTCTCAACCCCAAAGGCCTCAGTCTGCTCCTGGAGTAATGCCGGCTGCATCATCACCTGTGGAGAGTAAAGTGCAAGGTATTTCTGGAAATGGGACTGCTTCTGGATCTTATCTTGGAAGAGATGCGTTTCCTGCAACCCCAGTTTCTTCAAAACAAGATGTCCCTACTGGCAATAAGACTTCCACATCAGTCACTGTTCCTGTGTCTTCTGTTACACAACCAATAGTTAGAGCAACTTCCCTTGATTCTTTGCAGAATTCTTTTATGAAACCGCCTCTCGCTAATCAGGCCCTACGGAACCAGCCACATGTGAAGCCCAATCAACAGAGCATATTGCAACCTGCTTCCTCTGGATTATCAACAGGATTACAGAACTCTGTTTATGGACAGTCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACCAAAGTTTTTGTTGAGGTGGATAAAGATAGAGATGGAAAAATTACCGCTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAGGCTGCCAAGAGAGGTTTTAATGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTTTATTTGTTGGAGCGGCATAGGGAAGGACATGTTCTTCCTGCTATGCTTCCTAGCAACATCATGTTTGATTTTCCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACCATAGCAATGCAGCTTGGAGAACGACAGCTGGTCACCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATCTTCATGGAGCTCCTACAATTGGCGTACGTCCACCTATACCTGCTGCTGCCCTCCCGGTTGAGGATGAGCCACAGACCAATCAACCTAAATCAAAGGTTCCCGTGCTGGATAAAAATCTTGTTAGTCAACTTAGTACAGAAGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGAAGATGCTGAGAAAAAGGCACCTCATTTACTTCCTTATATGTCTTACTTTTGTTCTATCCTCAGATATGGACATAGTTGTGGTCTTGGTTCGTGGATTGGACAACTTGAAGTTGAAGAACTGGAGAAAGAAATTTTGGACTCTAGACAGAAAATTGAGTATTATCGTACTAAAATGCAGGAACTTATTTTGTACAAGAGCAGATGTGACAATCGGTTGAATGAAATATCTGAAAGAGTGTCTTCAGAGAAACGTGAGGTAGAGTCCCTTGCCAAGAAATATGAAGAGAAATATAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCACACGATTGTAAAGATGGAACAAGATATTAGTGAAGATGGTGTTCTTCAGGCTCGTGCTGATCGTATTCAGTCAGATATTGAAGAGTTGGTGAAAGTTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCAAAACCAATAACTCTGACGGAACTTCCTTTTGGCTGGCAACCTGGAATCCAAGTGGGTGCTGCTGACTGGGATGAAGATTGGGACAAATTCGAAGAGGAAGGTTTCTCTGTTATCAAGGAGCTCACTCTTGATGTACAAAATGTCATTGCCCCTCCTAAGCAGAAATCTAAGTCAGTACAAAAAGAAAAAGGTTCAGCCGTTGACAGCCAAAACGTTACACCTGCAGAGGATGCTGATACCAAGGAAGGAGGTTCTGCACCAGATGCTGATACCAAGGGAGGGAAACTGCCCTCTATGGATGAAACAGCTGTTGAAAATGGTTCCGCACATGATAATAAAAGTGAAAATGGGTCAGCCAAAAGTGCTCCTAACAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCTCCTAGCAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATATGGATTCCAGTTTTGGAAAGGCTGCTGGCTTTGATGCTTCACCCCGTGCTAAGGACGCTTTAAGTGATCATGGAGGTGCAGGATCTGTGTTTTCTGGTGACAAGAGCTACGACGAACCAGCTTGGGGAGCATTTGATGCGAACGATGATATTGACTCTGTTTGGGGCTTTAACGCTGGAGGTTCCACCAAGGCCGACAATGATGTAACCCGGGACAGCTACTTTTTCGATTCTGGGGATTTCGGTTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGAGAAGCACATTTGCTTTTGATGAGTCTGTTCCTAGCACCCCACTCGTCAACTCGGGAAATTCACCAAATAATTACCATGATGGATCGGAACCAAGCTTCGACAGCTTCTCAAGGTTCGATTCTTCCAGCGTGCATGACAGTGGTTTTTTCCCTCCCAAGGACACATTTACACGGTTCGATTCGATGCGCAGCAGTAGAGATTTCGACCAGGGTCCTGGATTCTCCTCATTCAGTCAATTCGATACAACGTACAGCAACAGAGACTTCGATCAGGGTGGATCCTCATCACTGACACGATTCGATTCAATGCGCAGCAGTAAGGACTTCGATCAGGGATCCCCTTCATTGTCACGATTTGATTCAATGCGTAGCAGCAAGGACTTCGACCAGGGATTCCCTTCATTGGCAAGATTCGACTCAATGCGCAGCAGCAAAGACTTCGATCAAGGTCACGGATTCCCATCGTTCGATGATCCAGACCCGTTTGGATCAACAGGGCCGTTTAGAGCGTCCCTGGATAATCAAACTCCAAAGAAAGGATCAGATAATTGGAGTGCCTTTTAG 3786 47.39 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVSFFQGSGLPKPVLFQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAASKIPAPQINFNTQPAPQFNSTAPVSTPLSGIGTPTPSQSSGLELQVPRNVTTNVPLVSSRESQLVRPPLATSNSAFRPAQGFSGVSTVSGPPPTNSIISNDWVSERASGTQGTPLQPPNRGVSPAGMQVGFGQSSAGLTTSQPQRPQSAPGVMPAASSPVESKVQGISGNGTASGSYLGRDAFPATPVSSKQDVPTGNKTSTSVTVPVSSVTQPIVRATSLDSLQNSFMKPPLANQALRNQPHVKPNQQSILQPASSGLSTGLQNSVYGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITAQEARNLFLSWRLPREVLMQVWDLSDQDNDSMLSVREFCIALYLLERHREGHVLPAMLPSNIMFDFPSNGHPVTPAASNHSNAAWRTTAGHQQHQGVPGSGNLHGAPTIGVRPPIPAAALPVEDEPQTNQPKSKVPVLDKNLVSQLSTEEQNSLNSKFQEAEDAEKKAPHLLPYMSYFCSILRYGHSCGLGSWIGQLEVEELEKEILDSRQKIEYYRTKMQELILYKSRCDNRLNEISERVSSEKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYHTIVKMEQDISEDGVLQARADRIQSDIEELVKVLNERCKSYGLRAKPITLTELPFGWQPGIQVGAADWDEDWDKFEEEGFSVIKELTLDVQNVIAPPKQKSKSVQKEKGSAVDSQNVTPAEDADTKEGGSAPDADTKGGKLPSMDETAVENGSAHDNKSENGSAKSAPNSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFAPKSAPSSPFASSVIGSPKEYMDSSFGKAAGFDASPRAKDALSDHGGAGSVFSGDKSYDEPAWGAFDANDDIDSVWGFNAGGSTKADNDVTRDSYFFDSGDFGLNPIRTDPFQAKRSTFAFDESVPSTPLVNSGNSPNNYHDGSEPSFDSFSRFDSSSVHDSGFFPPKDTFTRFDSMRSSRDFDQGPGFSSFSQFDTTYSNRDFDQGGSSSLTRFDSMRSSKDFDQGSPSLSRFDSMRSSKDFDQGFPSLARFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASLDNQTPKKGSDNWSAF 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7137748 7146682 + Cp4.1LG15g06350.1 Cpe15g00643 482101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 118 140 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 841 860 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 204 303 - -
Cpe15g00643 1261 ProSiteProfiles EH domain profile. 380 463 IPR000261 GO:0005515
Cpe15g00643 1261 SUPERFAMILY EF-hand 10 93 IPR011992 -
Cpe15g00643 1261 SUPERFAMILY EF-hand 370 463 IPR011992 -
Cpe15g00643 1261 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Cpe15g00643 1261 Gene3D - 375 464 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 226 246 - -
Cpe15g00643 1261 SMART eh_3 372 468 IPR000261 GO:0005515
Cpe15g00643 1261 SMART eh_3 2 98 IPR000261 GO:0005515
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 287 303 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 1217 1261 - -
Cpe15g00643 1261 Coils Coil 599 619 - -
Cpe15g00643 1261 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Cpe15g00643 1261 CDD EH 14 80 IPR000261 GO:0005515
Cpe15g00643 1261 CDD Prefoldin 597 719 - -
Cpe15g00643 1261 Pfam Cytoskeletal-regulatory complex EF hand 374 445 IPR000261 GO:0005515
Cpe15g00643 1261 Pfam EF hand 15 31 IPR002048 GO:0005509
Cpe15g00643 1261 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 1242 1261 - -
Cpe15g00643 1261 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 598 873 - -
Cpe15g00643 1261 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 962 1155 - -
Cpe15g00643 1261 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1189 1261 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 959 973 - -
Cpe15g00643 1261 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 9 568 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 259 273 - -
Cpe15g00643 1261 ProSiteProfiles EF-hand calcium-binding domain profile. 416 448 IPR002048 GO:0005509
Cpe15g00643 1261 PANTHER EH DOMAIN 9 568 - -
Cpe15g00643 1261 PANTHER EH DOMAIN 962 1155 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 1158 1195 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 1158 1200 - -
Cpe15g00643 1261 Gene3D - 9 104 - -
Cpe15g00643 1261 PANTHER EH DOMAIN 598 873 - -
Cpe15g00643 1261 PANTHER EH DOMAIN 1189 1261 - -
Cpe15g00643 1261 Coils Coil 634 661 - -
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 785 973 - -
Cpe15g00643 1261 CDD EH 384 450 IPR000261 GO:0005515
Cpe15g00643 1261 SMART efh_1 13 41 IPR002048 GO:0005509
Cpe15g00643 1261 SMART efh_1 383 411 IPR002048 GO:0005509
Cpe15g00643 1261 SMART efh_1 417 445 IPR002048 GO:0005509
Cpe15g00643 1261 MobiDBLite consensus disorder prediction 1083 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00643 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1320.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00633 Cpe15g00643 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00014 Cpe-Chr6:53576 Cpe15g00643 Cpe-Chr15:7137748 4.32E-07 dispersed
Cpe14g00735 Cpe-Chr14:5493342 Cpe15g00643 Cpe-Chr15:7137748 1.68E-14 dispersed
Cpe14g01043 Cpe-Chr14:8747902 Cpe15g00643 Cpe-Chr15:7137748 1.22E-07 dispersed
Cpe15g00643 Cpe-Chr15:7137748 Cpe20g00633 Cpe-Chr20:3965273 9.49E-14 dispersed
Cpe15g00643 Cpe-Chr15:7137748 Cpe02g00029 Cpe-Chr2:149020 2.72E-38 wgd
Cpe15g00643 Cpe-Chr15:7137748 Cpe04g00633 Cpe-Chr4:6545891 1.77E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00643 Cpe_Chr15 FPKM 7.602103 6.651257 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0