Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00647 ATGAATATGGTTTGGTTGCTTTCATTACTTCTTTGTATTCTAGGAATTTCCGAAGGGGCCTCAAGAACTGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTCGTTCTGTTAATGGAAAAGTGTCAAAGATTGCCATTGAGGCTGCTGAGAAAGATGTGAACTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCTATATCCATACATGATGCAAATTACAGTGGATTTCTTGGTATCACAGGAGCAATAAAGTACATGGTATCTGACACGGTTGCTATCCTTGGTCCACAAGATGCTACTATGGGACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTACTATCATTTACAGCATTGGATCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGACAGCAATAGCAGATATGATTAGTTATTACAGTTGGCACGACGTCGTCGTGCTTTTCACCGACGATGATCAATGTCGAAACAGTATGATCGCATTAGGCGACAAAATCGAAGAAAAAGGCTTGAAAATACCCTCTAAAGTAGCACTTCCCCCTTACCCAACAGCCACAAGAACTCAAGTTCACAACGCGCTCGTAAAGATTAAAATGATGGAATCTCGAGTTATCGTATTATATACGTTCTCGAAAACAGGTTTCTTGGTTTTCGAAATGGCTAAAAGCCTTGGAATGATGGAGGCTGGATATGTTTGGATAACCTCTAGTTGGCTATCAACAGTTATAGATTCTACTTCACCTCTTCCCTTGAAAATGGCTAACTCCATACAAGGCGTTCTTACGCTTCGGCTACATACACCCGAGTCGAAAAGGAAGCAATCGTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGATTGGGTTGAATACTTATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAGAGGATTGAAAGAGTTATTTGATCAAAATGGTACCATTTCTTTCTCCAAATATACACATGCTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGAGTGTTTAATGAGGGAAATGAGCTGCTTAACAATCTATTGAATATCAGTATGATTGGCCTGACAGGGCCTATTCAGTTTCAAGATAGATACCCTTTACATCCCTCATATGATATCTTGAATGTTGTGAAATCTGGTATGAAGAGGATTGGATATTGGTCGAACCATTCGGGGCTATCTGTCGTGGCGCCCGAAACGCTGTATGGAAAAGCAGTCAATCGTACCGAACAGTTAGGCACCACGGTGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTTCCACTCGATGGAAGACGGTTAAGAATTGGCGTTCCACGCCGAGTTAGTTATCAGGAGTTTGTGACGCCCGGAAGTGGTAACGAAACGATTAAAGGATACTGCATTGACGTGTTCGTTGCTGCGGTCGAGTTGCTTCCATATGCTGTTAATTATGAGTTTGTTTTGTTTGGAGATGGCAAGGAGAATCCTAGCTACTTTGAGCTTGTTAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACGAGTCGTACCAAGATTGTCGATTTTACGCAACCTTATATCGAGTCGGGGCTAATAGTGTTGGCCCCTGTGAAGAATTTGAACTCGAGTCCCTTGGCGTTCCTTCGACCGTTCACACCAATGTTGTGGATTGTCTCGGCAGCCTTTTTCCTTCTCATTGGATTAGTCGTGTGGATTTTGGAACGTCGAGATAACGACGAATTCCAAGGACATCCTAGGAAGCAATTCGTCACGATCCTCTGTCTAACGTCGATATTCACGGTACAGCTAGCAACCTCACCTATCACAGGAATTGATTCATTGATATCTACCAATGTCCGTATAGGATTCCAAGTTGGTTCGTTTGCTGAAAGTTATTTAAGTGAGGAACTTAACGTCCACAAGTCAAGGCTCATTGCTCTTGGATCCCCAAAAGAGTATGCTGCTGCTCTCAAGAACGGCACGGTGGGCGCTATCGTTGACGAGCAGCCATACATCGATGTTTTTCTCGCCGAGTACTGCGATTATTCGACAAAAGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCGCGAGACTCTCCATTGGCAGGAGACTTGTCGACGGCCATACTCACTCTATCTGAGAATGGCGGTCTTCAAAAGATTCACGATCAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGATTCCAATCTCGATCAAGAACAACTTCACTTGCAGAGTTTCATTGGACTCTTCTCCATTTGTGCCGGCACGCAAAGAGAGGAGGCTTATCGAAGAGAAAGATCGAAGATACACTCTCGAGTGAACGCGGAGAGAATTAGGGCTTTGGAAATTCAGATCGCGCCATCGTTTAGGGTTTCTGTAATCGAACTCTGCTCCTTCGGCCGCCCGAGCGAACCAGAACGCTTGCTCTCTTCGGAAGCCCTAATCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGCTCTAAAAAGGGCGGGAAGGGGAAGAGACCTGGAAAGGGCGGGAACCGTTTCTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATTGATAAGAAATGCCCCTTTACCGGAACTGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTACGGGGATTTAA 3015 43.85 MNMVWLLSLLLCILGISEGASRTEVVKVGAIFSLRSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAIKYMVSDTVAILGPQDATMGHILSHLSNELHVPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMISYYSWHDVVVLFTDDDQCRNSMIALGDKIEEKGLKIPSKVALPPYPTATRTQVHNALVKIKMMESRVIVLYTFSKTGFLVFEMAKSLGMMEAGYVWITSSWLSTVIDSTSPLPLKMANSIQGVLTLRLHTPESKRKQSFISRWNELSNGSIGLNTYGLYAYDTVWMIARGLKELFDQNGTISFSKYTHAGSLSGESLDFSSLGVFNEGNELLNNLLNISMIGLTGPIQFQDRYPLHPSYDILNVVKSGMKRIGYWSNHSGLSVVAPETLYGKAVNRTEQLGTTVWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGSGNETIKGYCIDVFVAAVELLPYAVNYEFVLFGDGKENPSYFELVNNVALKEFDAAVGDIAIVTSRTKIVDFTQPYIESGLIVLAPVKNLNSSPLAFLRPFTPMLWIVSAAFFLLIGLVVWILERRDNDEFQGHPRKQFVTILCLTSIFTVQLATSPITGIDSLISTNVRIGFQVGSFAESYLSEELNVHKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDVFLAEYCDYSTKGQQFTKSGWGFAFPRDSPLAGDLSTAILTLSENGGLQKIHDQWFSRKSCSSGDSNLDQEQLHLQSFIGLFSICAGTQREEAYRRERSKIHSRVNAERIRALEIQIAPSFRVSVIELCSFGRPSEPERLLSSEALIMAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7172461 7181548 + Cp4.1LG15g06550.1 Cpe15g00647 482105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00647 1004 Gene3D - 569 654 - -
Cpe15g00647 1004 Gene3D - 141 414 - -
Cpe15g00647 1004 PANTHER GLUTAMATE RECEPTOR 3.3 12 619 - -
Cpe15g00647 1004 SUPERFAMILY Periplasmic binding protein-like II 434 756 - -
Cpe15g00647 1004 Gene3D - 452 568 - -
Cpe15g00647 1004 CDD GluR_Plant 456 754 - -
Cpe15g00647 1004 PRINTS Ribosomal protein S17 family signature 933 956 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cpe15g00647 1004 PRINTS Ribosomal protein S17 family signature 976 983 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cpe15g00647 1004 PRINTS Ribosomal protein S17 family signature 966 976 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cpe15g00647 1004 Gene3D - 44 389 - -
Cpe15g00647 1004 Pfam Receptor family ligand binding region 44 399 IPR001828 -
Cpe15g00647 1004 Pfam Ribosomal protein S17 919 987 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cpe15g00647 1004 PANTHER GLUTAMATE RECEPTOR 3.3 620 783 - -
Cpe15g00647 1004 Pfam Bacterial extracellular solute-binding proteins, family 3 472 755 IPR001638 -
Cpe15g00647 1004 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 620 783 - -
Cpe15g00647 1004 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 619 - -
Cpe15g00647 1004 SMART GluR_14 459 756 IPR001320 GO:0015276|GO:0016020
Cpe15g00647 1004 Gene3D - 680 761 - -
Cpe15g00647 1004 ProSitePatterns Ribosomal protein S17 signature. 966 978 IPR019979 GO:0003735|GO:0005840|GO:0006412
Cpe15g00647 1004 SUPERFAMILY Nucleic acid-binding proteins 913 992 IPR012340 -
Cpe15g00647 1004 TIGRFAM uS17_arch: ribosomal protein uS17 899 988 IPR028333 -
Cpe15g00647 1004 Pfam Ribosomal_S17 N-terminal 849 917 IPR032440 -
Cpe15g00647 1004 Gene3D - 833 1003 - -
Cpe15g00647 1004 SUPERFAMILY Periplasmic binding protein-like I 20 449 IPR028082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00635 Cpe15g00647 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00305 Cpe-Chr7:1987060 Cpe15g00647 Cpe-Chr15:7172461 5.79E-96 dispersed
Cpe07g01146 Cpe-Chr7:10028339 Cpe15g00647 Cpe-Chr15:7172461 1.25E-95 dispersed
Cpe11g00317 Cpe-Chr11:1700647 Cpe15g00647 Cpe-Chr15:7172461 3.32E-106 dispersed
Cpe15g00647 Cpe-Chr15:7172461 Cpe16g00445 Cpe-Chr16:5732335 0 dispersed
Cpe15g00647 Cpe-Chr15:7172461 Cpe02g00025 Cpe-Chr2:134377 0 wgd
Cpe15g00647 Cpe-Chr15:7172461 Cpe04g00635 Cpe-Chr4:6560466 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00647 K05387 - csv:101208602 1269.22