Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00651 ATGAGAGCCTGCGTTTCAAGCGAAAAACCTCGGGAAGCTACCAAGATCGCAGTCGCATCACATCTTAGCTCGCCGGAGATGGAGAGCGCATCGGAGCTAGTGCCATTTCCACTGCTGCTCACACCGATTGAGTCCAATTACAGAGCCTGCACCATCCCTTACCGTTTCCCTTCCGATAATCCTCGCAAACCCACGCCCATTGAGCTCTCATGGATCGACGTCTTCTACAATTCCATCCCTTCCTTCAAAGAACGGGCGGCGAGTGATCCCACAGTCCCAGATGCCGAGGCTAAAGCTGAAAAATTTGCCCAGAGGTATGCTCAAATACTTGATGACATGAAGAAAGATCCTGAAAGTCATGGAGGACCTCCCGACTGCATTCTTCTATGTAGACTTCGGGAGCAAGTCCTGAGAGAATTGGGATTCAGAGATATATTCAAGAGAGATGAAGAGAATGCAAAGGCTATATCCTTATTTGCTGAGGTCATTCGCCTGAATGATGCCATTGAAGATGATAGTAAGCGCTTGGAGAATCTAGTTAAAGGAATATTTGCTGGGAATATTTTTGATCTTGGTTCGGCTCAGCTAGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTAGCGAGTTGTCAAAATCTTGTTCCTCGACCTTGGGTGATTGATGATTTGGACACATTCAAACTCAGATGGAGTAAAAAGTCATGGAAGAAGGTTATAATATTTGTTGATAATTCCGGTGCGGATATTATTTTGGGCATTTTGCCATTTGCTAGAGAGTTACTCCGGCGCGGAACTCAGGTTGTCTTGGCGGCCAATGACTTGCCCTCGATTAACGATGTAACTTATCATGAGCTAATTGAAATTTTATCGCAGCTGAAGGATGACCGTGGAGAGCTTGTGGGCGTCAATACTGCCAATCTTTTAATTGCCAATTCTGGCAACGATTTGCCGGTCATTGACCTTACTCAAGGTTCCCAGGAGCTTAGCTACCTGTCAACTGATGCAGATCTAGTTATCTTGGAAGGAATGGGTCGTGGAATAGAGACAAATCTTTATGCTCGATTTAAGTGTGATTCGCTAAAGATCGGCATGGTAAAGCATCTGGAGGTTGCACAATTTCTTGGAGGAAGGCTCTACGATTGCGTCTTCAAGTACAACGAAGTTTCTAGTTGA 1176 45.15 MRACVSSEKPREATKIAVASHLSSPEMESASELVPFPLLLTPIESNYRACTIPYRFPSDNPRKPTPIELSWIDVFYNSIPSFKERAASDPTVPDAEAKAEKFAQRYAQILDDMKKDPESHGGPPDCILLCRLREQVLRELGFRDIFKRDEENAKAISLFAEVIRLNDAIEDDSKRLENLVKGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLDTFKLRWSKKSWKKVIIFVDNSGADIILGILPFARELLRRGTQVVLAANDLPSINDVTYHELIEILSQLKDDRGELVGVNTANLLIANSGNDLPVIDLTQGSQELSYLSTDADLVILEGMGRGIETNLYARFKCDSLKIGMVKHLEVAQFLGGRLYDCVFKYNEVSS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7208912 7213636 - Cp4.1LG15g06570.1 Cpe15g00651 482109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00651 391 Gene3D - 54 143 IPR035073 -
Cpe15g00651 391 PANTHER PANTOTHENATE KINASE 31 389 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cpe15g00651 391 PIRSF UCP030210 33 391 IPR016949 -
Cpe15g00651 391 SUPERFAMILY AF1104-like 35 388 IPR036075 -
Cpe15g00651 391 PANTHER - 31 389 - -
Cpe15g00651 391 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 220 390 - -
Cpe15g00651 391 Pfam Damage-control phosphatase ARMT1-like domain 76 379 IPR002791 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00651 K24854 K24854; damage-control phosphatase, subfamily II, stand-alone protein [EC:3.1.3.-] - csv:101221235 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01025 Cpe-Chr9:9022976 Cpe15g00651 Cpe-Chr15:7208912 6.38E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g307 . . . . . Bpe12g00157 . . Cmo19g00830 . . . . . . . Cpe15g00651 Bhi05g01551 Tan02g0548 . . Hepe02g0351 . . . . . . . . . . . Cone3ag1254 Cone10ag1207 . Csa07g00208 . . Blo04g00611 Blo13g00465 . . Bpe15g00776 . Bma03g00643 Bma08g00710 . . . . . . Car19g00627 . . . . . . . . . . . . . . . . Lsi11g01303 . Chy01g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007984 0 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00651 Cpe_Chr15 FPKM 3.156522 3.540617 3.57043 2.76687 3.688288 5.231212 3.858519 0.0 1.605206 1.830894