Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00652 ATGAATCGCTCAGTTCTTAGTAGAGGAATATTGGAAGCAGACATTTCAGGAAGCTTATTGCGTTACAGAGCTAAGAGTTCTCGTGTTTTCAGTGTTAGAAGCTTTGGTGCTCGAGCAAATGGCTTAACTGATGATAGCAATGCCTTCTCAGAAACATGGAGAATGGCCTGTGGTTCAGCTGGAGTGGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTAAATTTTCAGGCCCTTGCAAAAATGTGTCGTCTCTAACGGTTAAAATGAAGGCAAGGGGATATTTGAAGGCATCAACAGACCTGTCAAAGTATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACGTTGACTGGAGGTGGAACCTTCGATGGCCGAGGCGCTGAGGCGTGGCCATTCAACAACTGCCTTGATGACCACAATTGCAATCTCCTTCCTACTAACTTGAAATTCGTGGCTATGAATAACACGGCACCATCTCTAGTGAAGCTGAGTGATATTTACTTCAAGAACATAAAAGGAACCTCTTCCTCTAAGGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGCTTCTTTCATCAGGTCAAAATCACCCTTCTTCTACTTGCAAATAT 675 44.0 MNRSVLSRGILEADISGSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVHLLLSSGQNHPSSTCKY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7214923 7217789 - Cp4.1LG15g06600.1 Cpe15g00652 482110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00652 225 Gene3D - 14 162 IPR012334 -
Cpe15g00652 225 Gene3D - 163 225 IPR012334 -
Cpe15g00652 225 PANTHER - 24 165 - -
Cpe15g00652 225 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 168 225 - -
Cpe15g00652 225 PANTHER - 168 225 - -
Cpe15g00652 225 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 24 165 - -
Cpe15g00652 225 Pfam Glycosyl hydrolases family 28 57 164 IPR000743 GO:0004650|GO:0005975
Cpe15g00652 225 SUPERFAMILY Pectin lyase-like 26 223 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00652 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - pop:7481681 204.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00583 Cpe-Chr1:3374736 Cpe15g00652 Cpe-Chr15:7214923 6.23E-42 dispersed
Cpe12g00920 Cpe-Chr12:7933419 Cpe15g00652 Cpe-Chr15:7214923 2.82E-53 dispersed
Cpe15g00652 Cpe-Chr15:7214923 Cpe12g00921 Cpe-Chr12:7937257 3.89E-08 dispersed
Cpe15g00652 Cpe-Chr15:7214923 Cpe08g00171 Cpe-Chr8:1105773 9.14E-24 transposed
Cpe15g00652 Cpe-Chr15:7214923 Cpe03g01350 Cpe-Chr3:10943620 2.70E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g308 . . . . . . . . Cmo19g00831 . . . . . . . Cpe15g00652 Bhi05g01549 . . . Hepe02g0350 . . Cla02g00331 . . Cco02g0345 . . . . . . . . Csa07g00209 . . Blo04g00548 . . . . . . . . . . . Cma19g00809 . Car19g00628 . . . . . . . . . . . . . . . . Lsi11g01304 . Chy01g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014006 0 2 0 0 0 0 1 2 1 1 0 0 0 1 1 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00652 Cpe_Chr15 FPKM 4.72854 5.185632 5.478489 5.848282 7.579763 8.231889 8.599339 6.075325 5.407758 5.511434