Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00658 ATGTCGATTTCGCAAACACTAGGTGGCACGTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTTGACAAGATCGTTAAGAATGCGGCTTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTAAGGAGGCTGCTCTTGATCCCGCATCACCGATTGCTGGTCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCCCTCCTTTTGGCTCTTGATGCCGCCTACGTCAAGGTTTCCGAGCCCACGCTTGAGTGCGTCTTCAAATTGTTCTCCCGCGGTATTTTCTGTGGGGAGATCGAGCGGCCGGATGGCGAGGCGAATTCCGGTGCCAAATCCATTATGTATAAGATCATTGAGTCTGTTTGCAAGTCGGGAGGTCTAGGTGATGAAGGAATTGAGCTCACTGTTCTCAGAGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTATTGATCCGCCGGGATTGTCTGGTTACTGTTGTTCGGAATTGTTATAATGTCTATCTGGGTGGTTTAAGTGTTACGAATCAGATCTGTGCGAAATCCGTTCTAGCTCAAATAATGGTCATTGTTTTCAGTAGGGCGGAGGAGAACTCCATGGATGCTCCTTTGAGAATAATTACTGTGAGTGAATTGTTGGAATTTACAGATAAGAACTTGAATGAAGGCAATTCTTTATACTTTTGCCAGAACTTTATTAACGAGATAATGGATGCTAGCGAAGGGATTGCGGACTTGAAGCTTTATTCATTTTCGGCACAATTGCAGAATGGCCATGCTTCGCCACCGAAAGGTGACAATAAAGGTGAATCTGATGTAGGAGAAGTGGAGGATGGAGCTGAATCAGGTGGTTGTAGTAAGATTAGGCTGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCGATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATCCTCTTGAGAGGGAAAATATTGTCTCTGGAACTGCTAAAGGTGGTCATGGGTAATGCAGGCCCGGTTTGGCGCTCTAACGAGAGGCAAGCATTTCATTCTCCATTGATCATTTTACTGATTCTCTTGTTTCTCAATTCTATCAAGCAATTTCTCTGTTTATCATTATTAAAAAACAGTGCCCTGTCGGTGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACGAGCTTGTTGACAAAATTTAGATCAGGATTGAAAGCAGAAATTGGTATCTTTTTTTCCATGCTTATCCTCCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAAATGACCGCGCTTAATTTGTTGGATAAGATATCTCAAGATTCACAGATTATGGTCGATATTTTTGTCAACTACGATTGCGATGTTGATTCCCCAAATATTTTCGAGAGGATGGTGAATGGCCTTTTGAAAACTGCTCTTGGACCACCTTCTGGTTCAACCACAACATTGTCTCCAGCACAGGATGTCTCATTTAGGCTTGAATCTGTTAAGTGTTTAGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAATTGAAGCTAGATGATACATATTTTCTCAAGACTTCTGAGAACGATGCTTCTCCCGAGAATCCTTTAAGTGGGGAAGAAACAGCTGCTGTTGACCCTGAGCTTCAATCAGATGGAAATTCTGAGTTCTCAGATGCTGCGACACTTGAGCAACGAAGAGCTTACAAAATCGAACTCCAGATCTTGTCTGGTAATTTCAACAAATTTCAACTTGGATTCATTGGGGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTACGTTGATGCCTTTAATTTTAATGCGATGAACTTTGGCGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAGGTTGCCAGGAGAGGCACAAAAGATTGACCGCATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAACCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTAATTATGCTGAACACGGATGCTCATAATAACATGGTGAAAGAAAAGATGACAAAAGCTGATTTTATCCGAAATAATCGAGGAATTGATGATGGCAAGGATTTACCTGATGAGTATCTTGGTACTCTCTATGATCAGATTGTTAGGCATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTCGATGGTATACTCAATTTAGTTTCTTGGAAGCAGACAGAAGAGAAAGCCGTTGGCGCCAATGGGCTTCTTATAAAGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAATCTGTTTATCACGCTGTGACTGATATAACAATATTGAGGTTTATGGCGGAAGTCTGCTGGGGTCCTATGTTGGCGGCATTTAGTGTGACTCTTGACCAAAGCGATGATAATGTTGCTACTTCTCAGTGCTTATTAGGCTTTCGGCATGCTGTGCATGTCACAGCTGTCATGGGCTTGCAGACTCAACGGGATGCTTTCGTGACGTCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATATCGATTGCCATAGAGGATGGTGATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCACCAGATGTATCCTTTTTGACAACGTCAAATATTGAAGCTGAAGAGAAAGCACTGAAGTCGATGGGTTTATCAACTCTGAAGAAAAAAGGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATACGACAGCACCTCTCTTAGAGCGAATTCTCCCGGACCCGTAACTCCCGAACAGATTAACCACCTAATTTCAAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGTTGAACCACATATTTGCTCATAGTCAAAGCTTGAACGGTGAAGCAATTGTAGCATTTGTGAAGGCCCTTTGCAAAGTTGCTATTGCAGAGTTGCAGGCTCCTACAGACCCACGTGTGTTCAGCCTAACCAAATTAGTTGAAGTGGCGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAATGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAAAATCTGTCAGTTGCAATATTTGTGATGGACTCACTGAGACAGCTCGCCATGAAATTTTTGGAGCGTGAGGAGCTTGCAAATTATAACTTCCAGAATGAGTTTCTGAGACCTTTCGTAATCGTTATGCAGAAAAGCAACTCCACGGAAATTAGGGAATTAATAGTTCGATGCATTTCGCAGATGGTTCTCAGTCGGGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTCATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAACATTGTCTTATTGGCTTTTGAAACCATGGAAAAAATAGTTCGAGAATACTTTCCTTATATAACTGAAACTGAAACTACAACGTTTACTGATTGTGTTCGATGTCTGATAACTTTTACAAATAGCAGATTTAACAGTGATGTAAGTCTCAATGCCATTGCATTCCTCCGGTTTTGTGCCGTAAAACTTGCGGAAGGGGGACTTGTTTGCTATGAGATGGTAGGAGAAAATGGTTCATCCAAATCTCTTGATGCACCCACACCTACACCCACACCCCCAGATAAGGATGATTATGCTTCCTATTGGGTTCCTCTGCTTGCAGGGCTATCAAAGTTAACATCCGATCCTAGATCACCAATCAGGAAAAGTTCCTTGGAAGTACTTTTTAATATCCTGAAGGATCATGGTCATCTTTTCTCACGTCAATTTTGGGTTGGTGTTTCCAATACCGTAGTTTTCCCCATATTCAATTCTTTGCACGAGAAGAAAGAAGTGGACATGAATGAACATGATGAACATTCAGAAGGAAGTACCTGGGATTCTAGTACCTGTCAAGTGGCGGCTGATTGTTTAGTAGATCTGTTCATTAGTTTTTTCAGTGTAATAAGGTCTCAACTGCCCGGCGTGGTGAGGATTCTGACCGGACTCATTAGTAATCCGATCAAGGGTCCTGCCAGCACGGGCGTCGCTGCGTTGATGCGTTTGGTAGGTGACTTGGCTAATAGGCTTACTGAAAAGGAATGGAGAGAGATTTTTCTTGCTATGAAGGAAGTGGCCACGTTACCTGTGCCTGGATTTATCAAGGTCCTGAGAACCATGGATGACGTTAATGTTCCCGGGATCTCTCGATCTTCTAATGATGTCGATGTCGCTTCAGATCCAGGTCTTTCAACCGATGGTCTCGATGACGATGATCTGCAAACGGCCACCTACATTGTTTCGAGAATGAAGAGTCATATCTCAATGCAACTCCTCTTCTTACAGGTCGTTACTGATCTCTACAAGAACCATGCCCAACCATTCTCATCAGACAACATTTCCATCATTCTAGACATCTTTTCTTCCATTTCCGCACACGCCCAGAAACTGAATTCCGACACGATCCTTCAAAAGAAGCTACAGAAAGTATGCTCCATCCTCGATATATCCGACCCACCCGTGGTTCACTTCGAAAACGAAACTTATCAGAGCCACCTCAACTTTCTCGAGAGTATGCTCGCGAAAAACCGCTTACTAACCAATTCAACTCTTATTGAATCCAAACTCATCACATTATGTGAAGAAATTTTACATATTTACTTAAAGTGCACCGAGATGCCAGGTCAGCCGAAAGAAACCAACCCGGCCGTGCCACATTGGATTCTTCCTTTGGGTCCAGCAAGGAAGGATGAACTGGCTGCTCGAACGTCTCTAGTCGCCTCAGCATTACGGGTTCTAAGCGGGTTCGAAAGGGATCTATTTAAAAGGTATGCTCCACAACTTTTTCCATTGTTGGTAGAGCTTATAAGGAGTGAACATAGCTCTGGAGAAGTTCAGATTGTTTTGAGCAGCATATTTCAATCATGTATAGGCCCAATAATCATGCAATAA 5085 42.77 MSISQTLGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIKEAALDPASPIAGLSPADAEFVLQPLLLALDAAYVKVSEPTLECVFKLFSRGIFCGEIERPDGEANSGAKSIMYKIIESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRRDCLVTVVRNCYNVYLGGLSVTNQICAKSVLAQIMVIVFSRAEENSMDAPLRIITVSELLEFTDKNLNEGNSLYFCQNFINEIMDASEGIADLKLYSFSAQLQNGHASPPKGDNKGESDVGEVEDGAESGGCSKIRLDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVVMGNAGPVWRSNERQAFHSPLIILLILLFLNSIKQFLCLSLLKNSALSVMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFSMLILRVLENVLQPSFLQKMTALNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERMVNGLLKTALGPPSGSTTTLSPAQDVSFRLESVKCLVSIIKSMGTWMDQQLKLDDTYFLKTSENDASPENPLSGEETAAVDPELQSDGNSEFSDAATLEQRRAYKIELQILSGNFNKFQLGFIGDYLGEREEFPLKVMHAYVDAFNFNAMNFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKEKMTKADFIRNNRGIDDGKDLPDEYLGTLYDQIVRHEIKMNSDSSASQSKQATSINKLLGFDGILNLVSWKQTEEKAVGANGLLIKHIQEQFKAKSGKSESVYHAVTDITILRFMAEVCWGPMLAAFSVTLDQSDDNVATSQCLLGFRHAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGDFLQEAWEHIFTCLSRIENLQLLGEGAPPDVSFLTTSNIEAEEKALKSMGLSTLKKKGLQNPAVMAVVRGGSYDSTSLRANSPGPVTPEQINHLISNLNLLDQIGNFELNHIFAHSQSLNGEAIVAFVKALCKVAIAELQAPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMVGENGSSKSLDAPTPTPTPPDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVSNTVVFPIFNSLHEKKEVDMNEHDEHSEGSTWDSSTCQVAADCLVDLFISFFSVIRSQLPGVVRILTGLISNPIKGPASTGVAALMRLVGDLANRLTEKEWREIFLAMKEVATLPVPGFIKVLRTMDDVNVPGISRSSNDVDVASDPGLSTDGLDDDDLQTATYIVSRMKSHISMQLLFLQVVTDLYKNHAQPFSSDNISIILDIFSSISAHAQKLNSDTILQKKLQKVCSILDISDPPVVHFENETYQSHLNFLESMLAKNRLLTNSTLIESKLITLCEEILHIYLKCTEMPGQPKETNPAVPHWILPLGPARKDELAARTSLVASALRVLSGFERDLFKRYAPQLFPLLVELIRSEHSSGEVQIVLSSIFQSCIGPIIMQ 1694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7243059 7252399 + Cp4.1LG15g06520.1 Cpe15g00658 482116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00658 1694 MobiDBLite consensus disorder prediction 266 290 - -
Cpe15g00658 1694 SUPERFAMILY Sec7 domain 575 731 IPR035999 GO:0005085|GO:0032012
Cpe15g00658 1694 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 594 1688 - -
Cpe15g00658 1694 Pfam Dimerisation and cyclophilin-binding domain of Mon2 16 205 IPR032629 -
Cpe15g00658 1694 Pfam Domain of unknown function (DUF1981) 1094 1176 IPR015403 -
Cpe15g00658 1694 SUPERFAMILY ARM repeat 1064 1686 IPR016024 -
Cpe15g00658 1694 Gene3D - 1084 1328 IPR011989 -
Cpe15g00658 1694 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 594 1688 - -
Cpe15g00658 1694 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 588 - -
Cpe15g00658 1694 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 298 469 IPR032691 -
Cpe15g00658 1694 Gene3D - 569 619 - -
Cpe15g00658 1694 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 588 - -
Cpe15g00658 1694 ProSiteProfiles SEC7 domain profile. 595 725 IPR000904 GO:0005085|GO:0032012
Cpe15g00658 1694 Pfam Sec7 domain 588 727 IPR000904 GO:0005085|GO:0032012
Cpe15g00658 1694 SMART sec7_5 545 727 IPR000904 GO:0005085|GO:0032012
Cpe15g00658 1694 Pfam BIG2 C-terminal domain 1487 1685 IPR046455 -
Cpe15g00658 1694 Gene3D - 620 740 IPR023394 -
Cpe15g00658 1694 CDD Sec7 595 727 IPR000904 GO:0005085|GO:0032012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00658 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 2863.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00646 Cpe15g00658 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00490 Cpe-Chr8:3150565 Cpe15g00658 Cpe-Chr15:7243059 0 dispersed
Cpe15g00658 Cpe-Chr15:7243059 Cpe04g00646 Cpe-Chr4:6614974 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00658 Cpe_Chr15 FPKM 5.608873 5.142354 0.325436 0.384331 26.145475 30.29863 28.636965 0.0 0.284676 0.0