Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00663 ATGAGTAAAATGTTTGTGTGTAAGAGAGATTCAAGTACCTTGGTTGTTGTTGTTGTTGTGGCTTCTTTGGTGTTGCTCTTTGGAGCAGTGGGCAGCCAAACGATCCGTGAGCGTCGTTTTTCGTATGTTCGATTCGATGAAAGGGAGCATAATCAAGACTTCATCTTCACCGGAGGCTCTTCCATCGACGGTGGGGCGCTGCAGTTAACTCCTGACTCGCAGAACAATGTTGTTAGCCTTCAAAATACATTTGGCCGCATTGTGTACCATCAGCCGTTCAAGTTATGGCTAGCTGATATTGATAAAAAGGAGGAAGATGACATTGTTGCTTCATTCAGCTCATACTTTTACATCAATATTTTCAGAAATAAAGAATGGAATGCTGGTGAGGGGCTTACTTTTCTTATAGCTCCGACTGGTGATGCACCTGAACAGAGCTGGGGGCAGTGGATGGGCCTCACCAATGCAACCACGGACGGCGACAGCAGAAATCAAATTGTAGCTATCGAATTCGATACCGAGAAGCAGGATTTCGACCCTGACGACAACCATATCGGTCTGAACATCAACTCCATTAAGTCAAGGAAGGCTGTTTCACTGAATAAATCTGGCATAGTTTTATCCCCAGAGACCGGAACTAATCACAGTATCTGGGTTGATTATGATGGCAAAGCCAAACTTTTGCAGGTTTACATGTCTATAAACAAAGATCCAAAACCTGATAAACCGCTTCTCAATGAAACGATAAACCTGAAACGATTTGTGAAACAAGAATCATACATTGGATTCTCTGCTTCTACAGGCAGCCCAGAGATTCAGTTGAACTGTGTCTTGGAATGGACACTGGATTTGGAGCGTCTGCCGGAGAAGAAAAATCTAACGTGGTTGAAGATCCTTGCCGGAGTTGGAATTCCGATACTAATCGCAATTCTTATTGGGGTTTGGTTATTTGTTGATTATAGGAAGAAGAGGAGAGTGAGTAGGGATGAGGAGTCAAATGTTCAGGGCACATTGAAGAGGTTGCCTGGAATGCCTAGAGAGTTCAAGTACAAGGAACTAAAAAGGGCGACTCATAACTTCCATGAAAGCATGGTTCTAGGAAATGGGGGATTCGGGGTCGTGTACAAAGGCGTTTTGCAGGACAAGGATAAGGACATTACCACATCTTCAAATTCTGTTTCCAGGCTTGAAATTGCCGTCAAGAAATTCTCCAGGGACAGCATTAAGAGCGAAGGCGATTTTCTGGATGAGCTCACCATTATCCACCGTCTTCGCCACAAGAACCTCGTCCGTTTAGAAGGGAAGGCTACTCCTGAAACCGATGTATATGGTTTTGGAGCAGTCGTGCTCGAGATCGTTTGTGGCAGGAGACCAGGAGCTGCTATTGAAGACGAGCAAAATCTGTGTACTCTAATTGATTGGGTGTGGAAGGGACACCGTGAAGGACACATCGAAAAATCTGTCGATAACCGGCTGGGCAATGGTTTTGTGGTTGATGAAGCTAGGAGGCTTCTACTACTTGGGTTGGCATGTACACATCCCACGGCAAGTGAAAGGCCACAAACTCAGGCTATACTCCAAATTTTAAACGGAGCTTTGCCAGCACCTCAAGTACCTCTGTTCAAGCCAGCCTTCATGTGGCCTCCCATGAGCACTACTTCCACCAATACCACTCTCACTTCACTGTCAAACACAAACAGCTCTCTTCCATGA 1713 45.18 MSKMFVCKRDSSTLVVVVVVASLVLLFGAVGSQTIRERRFSYVRFDEREHNQDFIFTGGSSIDGGALQLTPDSQNNVVSLQNTFGRIVYHQPFKLWLADIDKKEEDDIVASFSSYFYINIFRNKEWNAGEGLTFLIAPTGDAPEQSWGQWMGLTNATTDGDSRNQIVAIEFDTEKQDFDPDDNHIGLNINSIKSRKAVSLNKSGIVLSPETGTNHSIWVDYDGKAKLLQVYMSINKDPKPDKPLLNETINLKRFVKQESYIGFSASTGSPEIQLNCVLEWTLDLERLPEKKNLTWLKILAGVGIPILIAILIGVWLFVDYRKKRRVSRDEESNVQGTLKRLPGMPREFKYKELKRATHNFHESMVLGNGGFGVVYKGVLQDKDKDITTSSNSVSRLEIAVKKFSRDSIKSEGDFLDELTIIHRLRHKNLVRLEGKATPETDVYGFGAVVLEIVCGRRPGAAIEDEQNLCTLIDWVWKGHREGHIEKSVDNRLGNGFVVDEARRLLLLGLACTHPTASERPQTQAILQILNGALPAPQVPLFKPAFMWPPMSTTSTNTTLTSLSNTNSSLP 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7275759 7278635 + Cp4.1LG15g06680.1 Cpe15g00663 482121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00663 570 Pfam Legume lectin domain 39 293 IPR001220 GO:0030246
Cpe15g00663 570 Gene3D Transferase(Phosphotransferase) domain 1 437 531 - -
Cpe15g00663 570 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 13 434 - -
Cpe15g00663 570 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 433 568 - -
Cpe15g00663 570 SMART tyrkin_6 360 529 IPR020635 GO:0004713|GO:0006468
Cpe15g00663 570 Gene3D Phosphorylase Kinase; domain 1 319 436 - -
Cpe15g00663 570 Pfam Protein tyrosine and serine/threonine kinase 364 437 IPR001245 GO:0004672|GO:0006468
Cpe15g00663 570 Gene3D - 37 298 - -
Cpe15g00663 570 ProSiteProfiles Protein kinase domain profile. 360 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00663 570 SUPERFAMILY Protein kinase-like (PK-like) 344 560 IPR011009 -
Cpe15g00663 570 CDD lectin_legume_LecRK_Arcelin_ConA 40 282 IPR001220 GO:0030246
Cpe15g00663 570 PANTHER - 13 434 - -
Cpe15g00663 570 PANTHER - 433 568 - -
Cpe15g00663 570 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 296 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00663 - - - csv:101218232 721.465
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00668 Cpe15g00663 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00095 Cpe-Chr11:507510 Cpe15g00663 Cpe-Chr15:7275759 9.39E-47 dispersed
Cpe15g00663 Cpe-Chr15:7275759 Cpe08g01172 Cpe-Chr8:8690103 1.32E-10 dispersed
Cpe15g00663 Cpe-Chr15:7275759 Cpe04g00668 Cpe-Chr4:6758315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62864 PF00139 Lectin_legB 2.10E-65 CL0004 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00663 Cpe_Chr15 FPKM 54.129826 53.975967 62.193508 59.143898 45.788708 44.551888 50.179897 72.373993 75.262505 82.431297