Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00667 ATGGGGTCTGGAATCCGCCAATGCCATATCATAATCCTACGGTCGTCCTCTTTCACTTTCATGCCGTCTTCTCTGGAGCAGATATTTCTGTTCATCAATGAAAAAGTTGAACCGGACAAATTCCATATGAGGGCTCATTGGAAGAAGTCCCAGATTAGTTCTGTTCTAAGTCTGTTGAATTCTGTGATTATTTGTTGTGTCTTCCGTACACGTGCAAGAGAGAAAGATCAGAAAATGGATGAGAAGAGTGAAACCAAAGAGCCATCAAGGTCTAATCTGTCATATCCTTCTCATCAAATCAGCCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGAAAGTTTAGGAAATGACCATTCCAAAGGAGTGAGTAATGCCACTCATGATCAGGTTGGGGCAAAATCAACCGACACTTCCCTTTGTCCTGCTGCCAGCATGAAAGTATCTAAAAAGTGGATGGCATTTGAAAGTGAAGACTTAGATATAACAAAGACATACACAAAGAGCTTCAGTGGTAGCTTTGGGTCATCTTTTACTGAACTTTTGGAAACAACCATGACAAAAAAGACTGCAGAGAAGAATAAGATCGGCGATTTATCGTCGTTGACGTATGTTATCTCAGATGCAACAAAACCGGATTGCCCCATCGTGTTTGCCAGTGATAGGTTCTTGGTTATGACTGGATATACATTGGAGGAGCTCATTGGAAGGAACTGCCGTTTTCTTCAAGGACCGGAGACGGATAAGAACGAAGTAGCAAAAATACGAGATGCAATCGGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGAATGCAGGTTGAAATTGGCAAAAACACAGAAGGTACGAAGAAAAAAAGAGAAGTCCATGAGGTCCATGTCCATGACAGAGGTACAAGCTGAGAAGGTAATTAGGTCCATTGAGGTCGAAGCTGCGAAAAGTCTAAGATCTTACGTTCAGTCGAAAAGGCATGATGCAGATAGAAAGCACGAAGAGCCAGAAACGACTGGTGTTGATTATGCTCTGCACAAGGCTGTGGATGATGAGAATACTAGCACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGTGCTCTAGGATCTGCAGTCAAACGTGAAGAACAGACAGTTGTTGAGACGTCTGTTTTCAAGCTTAGGGACGGTGATCGTATCGCTACAAGAGAAAGGGACATACGTCAAGGAATTCAGTTGGCTACCACATTGGAACGAATTGAGAAGAAATTTTTTATCACGAACCCAAGGCTTCCTGATAATCCTATTATATTTGCATCTCATAGGTTTCTTCATTCCACAGAATACACGTGCGAAGAAGTTCTTGGGAGAAACTTTTGGTTTCTTCAGGGACTTGAAACAGATCAAGTAACTGTCTCAAAGATAAACGATGCAATTGAAGAACAAAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTTTTGAATTTGTTCCACTTACAACCCGTGTATGATCAAAAGAAGGGCGAGCTTCAATATTTCATTGGCGTGCTACTTCATCTAAAACGTTCGAAAGACCGGCTTTTAGATCGGATGAAGCATGAACGAACTAAGCTGGTCAAAGATATAGCAGAAAGTGTCGATAGGGCTGTTCGAGAACTTCCCGACGCCAACTTGAAACCAAGTAATTTCTGGGCAATCTACTGTCAGCCAGTCTTACCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATAGGACTCCATCATTTTAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGAAGGTTCTATGCTGCAGAAGTTGTGATTGCTTTAGAGTACCTTCACTGTTTAGGTATTGTCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAAAAAGACGGACATATCGTCCTCACTGATTTCGATTTATCATTTAAGACGTCGAATATACAAACCACAAAATCTCCACCCCGGAAAAGGATTAAGGGATCTTGGCATAGATTGGTACCGACGTTCGTTGCTGAACCGATTGTACAACTGAATTCATTCGTAGGAACTGAAGAGTACATTGCTCCCGAGATCATTATGGGAGCTGGCCATAATAGTTCTATTGACTGGTGGACTCTTGGTATTTTGTTGTATGAAATGCTCTATGGTCGCACACCCTTCAAAGGCAAGAACAGGAAGAAAACCTTTTCCAATATTTTGTTCAAGGACTTAACCTTTCCCCTTAGTATTAAGGTGAGTCTTGCAGGAAAGCAGCTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCAAGTACCGGTTCCAATGAAATCAAACGACATCCATTTTTCCGTCATATAAACTGGCCTAAGATACGAACAATGACTCCACCATCAACAGAAGTAGCCCTTCAGTTATTTGAGAGAGATCCAAAGGCTAATGATTTGCAGTGGGAAGATGGAGTGCTCAGTCACTCAATAGGCTCTGATATATTCTGA 2553 41.83 MGSGIRQCHIIILRSSSFTFMPSSLEQIFLFINEKVEPDKFHMRAHWKKSQISSVLSLLNSVIICCVFRTRAREKDQKMDEKSETKEPSRSNLSYPSHQISPTEKRTPIEVFQVPESLGNDHSKGVSNATHDQVGAKSTDTSLCPAASMKVSKKWMAFESEDLDITKTYTKSFSGSFGSSFTELLETTMTKKTAEKNKIGDLSSLTYVISDATKPDCPIVFASDRFLVMTGYTLEELIGRNCRFLQGPETDKNEVAKIRDAIGKGNSYCGKLLNYKKNECRLKLAKTQKVRRKKEKSMRSMSMTEVQAEKVIRSIEVEAAKSLRSYVQSKRHDADRKHEEPETTGVDYALHKAVDDENTSTADNQKARFKESALGSAVKREEQTVVETSVFKLRDGDRIATRERDIRQGIQLATTLERIEKKFFITNPRLPDNPIIFASHRFLHSTEYTCEEVLGRNFWFLQGLETDQVTVSKINDAIEEQREITLQIINYTKSGKKFLNLFHLQPVYDQKKGELQYFIGVLLHLKRSKDRLLDRMKHERTKLVKDIAESVDRAVRELPDANLKPSNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGEKIGLHHFKPIKPLGFGDIGRFYAAEVVIALEYLHCLGIVYRDLKPENILLQKDGHIVLTDFDLSFKTSNIQTTKSPPRKRIKGSWHRLVPTFVAEPIVQLNSFVGTEEYIAPEIIMGAGHNSSIDWWTLGILLYEMLYGRTPFKGKNRKKTFSNILFKDLTFPLSIKVSLAGKQLIDALLQRDPARRLGSSTGSNEIKRHPFFRHINWPKIRTMTPPSTEVALQLFERDPKANDLQWEDGVLSHSIGSDIF 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7292808 7306004 - Cp4.1LG15g06710.1 Cpe15g00667 482125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00667 850 ProSiteProfiles PAS repeat profile. 219 265 IPR000014 -
Cpe15g00667 850 MobiDBLite consensus disorder prediction 76 107 - -
Cpe15g00667 850 PANTHER BNAC03G12530D PROTEIN 205 278 - -
Cpe15g00667 850 PANTHER FLIPPASE KINASE 1-RELATED 616 849 - -
Cpe15g00667 850 Pfam PAS domain 213 279 IPR000014 -
Cpe15g00667 850 Pfam PAS domain 431 522 IPR000014 -
Cpe15g00667 850 MobiDBLite consensus disorder prediction 89 106 - -
Cpe15g00667 850 CDD PAS 219 268 IPR000014 -
Cpe15g00667 850 ProSiteProfiles Protein kinase domain profile. 448 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00667 850 Gene3D Transferase(Phosphotransferase) domain 1 619 816 - -
Cpe15g00667 850 SMART serkin_6 517 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00667 850 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 279 IPR035965 -
Cpe15g00667 850 Gene3D PAS domain 397 558 - -
Cpe15g00667 850 Gene3D PAS domain 207 342 - -
Cpe15g00667 850 SUPERFAMILY Protein kinase-like (PK-like) 619 827 IPR011009 -
Cpe15g00667 850 Pfam Protein kinase domain 618 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe15g00667 850 SUPERFAMILY PYP-like sensor domain (PAS domain) 424 521 IPR035965 -
Cpe15g00667 850 PANTHER BNAC03G12530D PROTEIN 292 618 - -
Cpe15g00667 850 CDD PAS 431 525 IPR000014 -
Cpe15g00667 850 PANTHER BNAC03G12530D PROTEIN 616 849 - -
Cpe15g00667 850 PANTHER FLIPPASE KINASE 1-RELATED 205 278 - -
Cpe15g00667 850 PANTHER FLIPPASE KINASE 1-RELATED 292 618 - -
Cpe15g00667 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00667 K20715 PHOT; phototropin [EC:2.7.11.1] - csv:101213364 751.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01329 Cpe15g00667 CCT
Cpe15g00667 Cpe16g00373 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01442 Cpe-Chr1:8635003 Cpe15g00667 Cpe-Chr15:7292808 2.90E-18 dispersed
Cpe15g00667 Cpe-Chr15:7292808 Cpe16g00373 Cpe-Chr16:5385784 5.16E-16 dispersed
Cpe15g00667 Cpe-Chr15:7292808 Cpe05g01329 Cpe-Chr5:9339804 1.08E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g325 . Blo15g00407 Bda06g00455 . Bpe07g00688 Bpe12g00162 . Bma12g00892 Cmo19g00847 . Cma02g00309 . Car02g00191 . . . Cpe15g00667 Bhi05g01524 . . . . . . Cla02g00317 . . . . . . Cone12ag1283 Cone8ag1349 Cone3ag1262 . . Csa07g00227 . . . Blo13g00457 . . . . . Bma08g00703 . Cmo02g00304 . . Cma19g00829 . Car19g00644 Cpe16g00373 Cpe05g01329 . . . . . . . Cla02g01047 . Cec02g1120 Cco02g1154 Clacu02g1101 Cmu02g1061 Cre02g1369 Lsi11g01320 . Chy01g00553 Cme11g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011417 0 7 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62865 PF00069 Pkinase 2.30E-39 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00667 Cpe_Chr15 FPKM 167.225449 181.643845 126.917679 120.387726 220.063171 248.334641 219.434189 114.229881 126.829483 110.627129