Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe15g00675 | ATGGGCCTCTCCAGTCTTCCAGCTCCATCTGAAGGAGTCCTAAACGCAATTCTCATAAACGCTGCACTATCCATTTCCATCTTCAAATGCATTGTTCGTTTGATCCTTCACATTTTAGGAATCCGTTTCTCATCGCCATCATCCTTAGTCCCATCTACAGATTCCTTTGAAAATTCCTCAGAGTTGGGAGATTCCAACTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGGAACAGATATCCAAGTATTAGGTTTGATAAAGTACAGGGCTCCGAACGTCTCGAACACGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCAGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCAGAAGAAGAGAAATCGTGCTTTTGGTGA | 465 | 42.8 | MGLSSLPAPSEGVLNAILINAALSISIFKCIVRLILHILGIRFSSPSSLVPSTDSFENSSELGDSNFGSSWSYLEMFRNRYPSIRFDKVQGSERLEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW | 154 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 7360788 | 7362269 | + | Cp4.1LG15g06860.1 | Cpe15g00675 | 482133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe15g00675 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Cpe15g00675 | 154 | SUPERFAMILY | RING/U-box | 83 | 145 | - | - | |
| Cpe15g00675 | 154 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 154 | - | - | |
| Cpe15g00675 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Cpe15g00675 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Cpe15g00675 | 154 | PANTHER | - | 1 | 154 | IPR044249 | - | |
| Cpe15g00675 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 146 | IPR013083 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00657 | Cpe15g00675 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g01385 | Cpe-Chr5:9746425 | Cpe15g00675 | Cpe-Chr15:7360788 | 7.31E-72 | dispersed | |
| Cpe11g01057 | Cpe-Chr11:8879577 | Cpe15g00675 | Cpe-Chr15:7360788 | 6.30E-06 | dispersed | |
| Cpe15g00675 | Cpe-Chr15:7360788 | Cpe16g00361 | Cpe-Chr16:5310864 | 4.32E-70 | dispersed | |
| Cpe15g00675 | Cpe-Chr15:7360788 | Cpe04g00657 | Cpe-Chr4:6701276 | 1.89E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe15g00675 | K16285 | - | csv:101215843 | 265.774 |