Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00685 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGATGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCGGCGTCGGTTGATGTCAACGTCGCAAGTTGGAGTAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACGCTTTTTCGTTCGCCAGGAGCTGCAGCGTTACAGAAAGCAGCTGATTTTAAGGAAGTTAATCTTCTTAATCCTATACTAGTCCATTGTAAAACTTCTGGTAAACCGTTTTATGCGATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTTGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCCGAGTGCTGTCGATCGGACTTAGAACCTTATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGTCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCAGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGCTCTATTGCATCTCTCGTGATGTCTATTACGATCAATGAGAGTGATAGTGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACCGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCGGAAAGAAATTTTGGTTAGTTGGAGTCACCCCTTCAGAGGCACAAATTAGAAATATAGCTGAATGGCTCCTCGAAGACCATAGCGGAAGCGCAGGTTTAAGTACCGATAGCCTAGTCGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCCGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGACGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCGCTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTAGGTATCCAGCAAGCCATTGGCATGCCCATAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACGTTTGGAATTCCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTATATTTTATAGGGCAGGATGTTACAAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGCGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTGTCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTCAAAGATCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACAGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAAAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTTCAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGTCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTAATGGGTTCATCGGAGTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCTGGGACAATTATACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGACGTCGTAATGAATCAAACCACGATTTTGAGTCGAGAGCGCCAGGTGAAGATCATTTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCGTCTTCCGAGCAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCTGTTCCTGGAATTCCTGCACACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATAATGAATGGCACTGTACAGTATATCCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTCGAGCATATTGCTTAA 3360 42.98 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNVASWSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLSPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFGKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLGIQQAIGMPIVDCLVNDSIKVVKKMLSLAVQGIEEKNIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVVGVYFIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELQYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLMGSSELNEEQKRLLKSNTLSLGQLYKIVHDTDIQSIEECYIETNCREFNLGDVLDVVMNQTTILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVVFRATPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAETSSFIILIEFPLVEHIA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7435689 7442279 + Cp4.1LG15g06760.1 Cpe15g00685 482143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cpe15g00685 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Cpe15g00685 1119 CDD PAS 625 731 IPR000014 -
Cpe15g00685 1119 Gene3D - 935 1108 IPR036890 -
Cpe15g00685 1119 CDD HATPase_Phy-like 1001 1112 IPR044767 -
Cpe15g00685 1119 Gene3D - 200 559 IPR029016 -
Cpe15g00685 1119 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cpe15g00685 1119 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cpe15g00685 1119 Gene3D PAS domain 601 745 - -
Cpe15g00685 1119 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe15g00685 1119 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1116 - -
Cpe15g00685 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1110 IPR036890 -
Cpe15g00685 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cpe15g00685 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cpe15g00685 1119 Gene3D - 403 576 IPR043150 -
Cpe15g00685 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cpe15g00685 1119 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cpe15g00685 1119 Gene3D PAS domain 74 322 - -
Cpe15g00685 1119 Gene3D PAS domain 760 873 - -
Cpe15g00685 1119 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cpe15g00685 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cpe15g00685 1119 SMART HKATPase_4 1002 1116 IPR003594 -
Cpe15g00685 1119 SUPERFAMILY GAF domain-like 199 395 - -
Cpe15g00685 1119 SMART pas_2 746 815 IPR000014 -
Cpe15g00685 1119 SMART pas_2 616 682 IPR000014 -
Cpe15g00685 1119 PANTHER PHYTOCHROME C 1 1116 - -
Cpe15g00685 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cpe15g00685 1119 CDD PAS 758 868 IPR000014 -
Cpe15g00685 1119 SMART gaf_1 219 408 IPR003018 GO:0005515
Cpe15g00685 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cpe15g00685 1119 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1108 IPR003594 -
Cpe15g00685 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
Cpe15g00685 1119 SUPERFAMILY GAF domain-like 406 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00609 Cpe-Chr7:4182080 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe09g00775 Cpe-Chr9:7209264 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe11g00763 Cpe-Chr11:6110050 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00685 - - csv:101211915 2033.84