Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00685 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGATGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCGGCGTCGGTTGATGTCAACGTCGCAAGTTGGAGTAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACGCTTTTTCGTTCGCCAGGAGCTGCAGCGTTACAGAAAGCAGCTGATTTTAAGGAAGTTAATCTTCTTAATCCTATACTAGTCCATTGTAAAACTTCTGGTAAACCGTTTTATGCGATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTTGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCCGAGTGCTGTCGATCGGACTTAGAACCTTATCTTGGCTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGTCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCAGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGCTCTATTGCATCTCTCGTGATGTCTATTACGATCAATGAGAGTGATAGTGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACCGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCGGAAAGAAATTTTGGTTAGTTGGAGTCACCCCTTCAGAGGCACAAATTAGAAATATAGCTGAATGGCTCCTCGAAGACCATAGCGGAAGCGCAGGTTTAAGTACCGATAGCCTAGTCGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCCGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGACGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCGCTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTAGGTATCCAGCAAGCCATTGGCATGCCCATAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACGTTTGGAATTCCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTGTAGGAGTATATTTTATAGGGCAGGATGTTACAAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGCGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTGTCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTCAAAGATCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACAGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAAAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTTCAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGTCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTAATGGGTTCATCGGAGTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCTGGGACAATTATACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGACGTCGTAATGAATCAAACCACGATTTTGAGTCGAGAGCGCCAGGTGAAGATCATTTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCGTCTTCCGAGCAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCTGTTCCTGGAATTCCTGCACACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATAATGAATGGCACTGTACAGTATATCCGAGAGGCCGAGACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTCGAGCATATTGCTTAA 3360 42.98 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNVASWSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLSPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFGKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLGIQQAIGMPIVDCLVNDSIKVVKKMLSLAVQGIEEKNIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVVGVYFIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELQYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLMGSSELNEEQKRLLKSNTLSLGQLYKIVHDTDIQSIEECYIETNCREFNLGDVLDVVMNQTTILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVVFRATPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYIREAETSSFIILIEFPLVEHIA 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7435689 7442279 + Cp4.1LG15g06760.1 Cpe15g00685 482143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cpe15g00685 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Cpe15g00685 1119 CDD PAS 625 731 IPR000014 -
Cpe15g00685 1119 Gene3D - 935 1108 IPR036890 -
Cpe15g00685 1119 CDD HATPase_Phy-like 1001 1112 IPR044767 -
Cpe15g00685 1119 Gene3D - 200 559 IPR029016 -
Cpe15g00685 1119 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cpe15g00685 1119 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cpe15g00685 1119 Gene3D PAS domain 601 745 - -
Cpe15g00685 1119 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe15g00685 1119 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1116 - -
Cpe15g00685 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1110 IPR036890 -
Cpe15g00685 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cpe15g00685 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cpe15g00685 1119 Gene3D - 403 576 IPR043150 -
Cpe15g00685 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cpe15g00685 1119 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cpe15g00685 1119 Gene3D PAS domain 74 322 - -
Cpe15g00685 1119 Gene3D PAS domain 760 873 - -
Cpe15g00685 1119 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cpe15g00685 1119 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cpe15g00685 1119 SMART HKATPase_4 1002 1116 IPR003594 -
Cpe15g00685 1119 SUPERFAMILY GAF domain-like 199 395 - -
Cpe15g00685 1119 SMART pas_2 746 815 IPR000014 -
Cpe15g00685 1119 SMART pas_2 616 682 IPR000014 -
Cpe15g00685 1119 PANTHER PHYTOCHROME C 1 1116 - -
Cpe15g00685 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cpe15g00685 1119 CDD PAS 758 868 IPR000014 -
Cpe15g00685 1119 SMART gaf_1 219 408 IPR003018 GO:0005515
Cpe15g00685 1119 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cpe15g00685 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cpe15g00685 1119 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cpe15g00685 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1002 1108 IPR003594 -
Cpe15g00685 1119 ProSiteProfiles Histidine kinase domain profile. 897 1116 IPR005467 -
Cpe15g00685 1119 SUPERFAMILY GAF domain-like 406 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00685 - - - csv:101211915 2033.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00609 Cpe-Chr7:4182080 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe09g00775 Cpe-Chr9:7209264 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe20g00493 Cpe-Chr20:2847129 0 dispersed
Cpe15g00685 Cpe-Chr15:7435689 Cpe11g00763 Cpe-Chr11:6110050 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00685 Cpe_Chr15 FPKM 7.329124 6.586014 11.380472 10.898441 8.361701 10.140178 10.909433 17.727964 18.668976 22.841496