Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00814 ATGAGCAGTGTTTGTGCTGAGCAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTAAGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTCGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAGGAAGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGAGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCTGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCGGTGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAGTTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCGACTTCCTCGCCGACATCGACGCTTATCGGAATGTCTCATCTCTCTCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCAAGGTACAATCCAGATCCGTCTAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCGCTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGATCAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTTAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGCTGGGCCTCCGCCTCTGCCTCCGCCTCCGATCCAGATCTCGGATGGGTTAACGATCTTCTGATGTAA 1092 49.18 MSSVCAEQQKFQFQFQLPSSCSKILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNAALAASASRQTIPWIDVSSLNTEDQLQFVLSPSTPNVSAASVNFSVNNKGNADNGWASASASASDPDLGWVNDLLM 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8117133 8118224 + Cp4.1LG15g08070.1 Cpe15g00814 482272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00814 363 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Cpe15g00814 363 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Cpe15g00814 363 Gene3D - 110 173 - -
Cpe15g00814 363 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 46 362 - -
Cpe15g00814 363 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Cpe15g00814 363 PANTHER UNKEMPT FAMILY MEMBER 46 362 IPR045234 -
Cpe15g00814 363 SUPERFAMILY CCCH zinc finger 109 139 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00230 Cpe-Chr6:1226770 Cpe15g00814 Cpe-Chr15:8117133 1.28E-63 dispersed
Cpe15g00814 Cpe-Chr15:8117133 Cpe18g00382 Cpe-Chr18:5117200 5.24E-65 dispersed
Cpe15g00814 Cpe-Chr15:8117133 Cpe04g00808 Cpe-Chr4:7624036 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50654 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00814 K23047 - csv:101211149 567.77