Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00886 ATGGATGAAACTCCAGAAGTTGGCAATGGAGACGGAGATGGCGACGATCAAATCCCGCTCCCCGGGTTCCGATTTCATCCCACGGATGAAGAACTGGTGAGCTTTTATCTTCGTCGGAAAGTCGAGAAGAGACCCATCAGCCTAGAACTCATCAAACAGATTGATATCTACAAACACAACCCATGGGACCTTCCATATGCAAGCAGCAACGTGGGAGATAAAGAATGGTACTTTTATTGCAAGAGAGGGAGGAAGTACAAGAATAGTATAAGGCCAAATAGGGTAACTGGGTCAGGGTTTTGGAAGGCCACGGGCATAGACAAGCCAGTGTATTCCAACGGAGGGGAAGGAAATGAATGCATTGGCCTCAAGAAGACACTCGTTTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTCCGCCTCCCTCCGCCCACTCCCACTGCCCACAAACCCCATCCAACCTCCAAGAACTTTGCTGAAGAAGCGAACACATTGAAGATGAGCAATAATGATCCAATGATAGTGAATTTCAGCTGTGAATCAATGATAATCCAAACGGAGAAGAAGCCATTTCTTCCAAATTACCCGAATCATCAAGAATGGAACAATTATGATCAATACAGCAGCACTTCCATGGACCCATCTCCAGTGTCCAGTGGCATCATCTCACCACCAATTGGGTACCCCACAAATCAGCAGCTAGATGTGAATGATTTCTTCACCAACAGCAATTGGGATGAGCTGAGATCAGTGGTGGACATGTTGTAG 792 46.34 MDETPEVGNGDGDGDDQIPLPGFRFHPTDEELVSFYLRRKVEKRPISLELIKQIDIYKHNPWDLPYASSNVGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVYSNGGEGNECIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPPPTPTAHKPHPTSKNFAEEANTLKMSNNDPMIVNFSCESMIIQTEKKPFLPNYPNHQEWNNYDQYSSTSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8560357 8561748 - Cp4.1LG15g08880.1 Cpe15g00886 482344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00886 263 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 8 157 - -
Cpe15g00886 263 SUPERFAMILY NAC domain 20 155 IPR036093 GO:0003677|GO:0006355
Cpe15g00886 263 Gene3D NAC domain 28 181 IPR036093 GO:0003677|GO:0006355
Cpe15g00886 263 MobiDBLite consensus disorder prediction 1 21 - -
Cpe15g00886 263 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Cpe15g00886 263 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Cpe15g00886 263 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00886 Cpe16g00719 CCT
Cpe04g00855 Cpe15g00886 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01356 Cpe-Chr2:11959898 Cpe15g00886 Cpe-Chr15:8560357 1.42E-62 dispersed
Cpe05g01561 Cpe-Chr5:10733902 Cpe15g00886 Cpe-Chr15:8560357 1.77E-35 dispersed
Cpe09g00175 Cpe-Chr9:1027305 Cpe15g00886 Cpe-Chr15:8560357 2.23E-72 dispersed
Cpe15g00886 Cpe-Chr15:8560357 Cpe14g00649 Cpe-Chr14:4202163 2.99E-49 dispersed
Cpe15g00886 Cpe-Chr15:8560357 Cpe16g00719 Cpe-Chr16:7324114 3.04E-07 wgd
Cpe15g00886 Cpe-Chr15:8560357 Cpe04g00855 Cpe-Chr4:7883661 3.41E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50659 PF02365 NAM 6.10E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00886 - - cmos:111437040 361.688