Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00900 ATGTCTATCCATAGTCCTCCCAAGCTCCTAATTTCACCTTCTCTTCTCCAATTCCAATCTTTCCATTGCCCATTTCCCTTCCATTTCCAGCAAAAAAATGGAATCAATAAACATTTCCATTTACACCGCCATCAGCGTCTCCTCCTTCTGCCTAGAGCTATTCGCGAATGGCAAGAATATGAAGAGGCAGTGAAGCGCAAGGACCTCGCTGAAGCTCTTAGGTTTCTCGAATCCCTTGGCAGAGAGAGCGCAATCGAACCCCCTAATGATTCGGCACTTTCTGATTCCGCCCCTTCCGCTCTCGGGAATCCGCGGTTGTCTGGCTGGGAGAGGGACTGGGAGGTACTAGACACTTGTTTGAATGCGGATGATATGAAGCTTGTTGCCAATGCTTATGGGTTTCTCAGGGATAGAGGATTTTTGCCCAATTTTGGAAAATGCAGGAACATTGTTTTGGAGGGTCCAAGAGATGTCACGCCCTCTGTATTGGAGTCTACAACTGGATTAGAAGGTGATTTGACAAATCTCTGCTTTCAGATGGATTTATTTTTCATATTCAACGTATCACTTAATTTTCTTTTTCTGGCCTCCTCTGCTATTCCAGTGTTCAAATTGTCTCCAAAGAAGTGGGGTCTTTCAGGCAGCTCTCGTTATGCTTTGATTGCTTGTCTTGGTGGAACATCATTCCTGCTCTCCCAGGACATAGATATAAGGCCAAACCTTTTCGCACTGTTGGGGCTAGCGTTTTTGGATTCTATCCTCCTTGGTGGTACTTGTCTAGCGCAAATCTCAAGCTGTTGGCCACCATATAGGCGTCGAATCCTTGTACATGAAGCTGGACATCTACTGACTGTTCATGCAATTATGCAAGCACAACTCCTGAATGTTGATAAAAGTTCCTTGTACCCTATTGCAGCTTACCTCATGGGCTGCCCAATTCGTGGAGTGATTTTAGATCCGATTGTTGCTATGCAAATGGGGATACAAGGACAGGCAGGTACCCAGTTTTGGGATGAAAAAATGGCAAGCAACCTTGCTGAAGGACGATTGGATGGTACTTCCTTTGACAGGTACTGCATGGTTCTTTTTGCGGGCATTGCAGCTGAAGCTCTTGTTTACGGGGAAGCAGAGGGTGGAGAGAATGATGAAAATTTGTTTAGAAGTATCTGCGTTCTTTTGCAACCCCCATTGTCTGTTGCGCAGATGTCAAATCAAGCAAGATGGGCTGTTCTACAATCTTACAATCTGCTAAAGTGGCACAAACATGCACACCAAGTAGCAGTCAAAGCTTTGGAAAGTGGAAGCAGTCTCAGTGTTGTAATTAGAAGAATTGAGAATGCATTATCGACAAATAGATGA 1359 44.74 MSIHSPPKLLISPSLLQFQSFHCPFPFHFQQKNGINKHFHLHRHQRLLLLPRAIREWQEYEEAVKRKDLAEALRFLESLGRESAIEPPNDSALSDSAPSALGNPRLSGWERDWEVLDTCLNADDMKLVANAYGFLRDRGFLPNFGKCRNIVLEGPRDVTPSVLESTTGLEGDLTNLCFQMDLFFIFNVSLNFLFLASSAIPVFKLSPKKWGLSGSSRYALIACLGGTSFLLSQDIDIRPNLFALLGLAFLDSILLGGTCLAQISSCWPPYRRRILVHEAGHLLTVHAIMQAQLLNVDKSSLYPIAAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMASNLAEGRLDGTSFDRYCMVLFAGIAAEALVYGEAEGGENDENLFRSICVLLQPPLSVAQMSNQARWAVLQSYNLLKWHKHAHQVAVKALESGSSLSVVIRRIENALSTNR 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8663631 8667957 - Cp4.1LG15g08970.1 Cpe15g00900 482358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00900 452 SUPERFAMILY FtsH protease domain-like 268 437 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cpe15g00900 452 PANTHER - 39 170 - -
Cpe15g00900 452 PANTHER - 196 451 - -
Cpe15g00900 452 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE 39 170 - -
Cpe15g00900 452 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE 196 451 - -
Cpe15g00900 452 Gene3D Peptidase M41 265 438 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00900 - - - csv:101213430 660.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00863 Cpe15g00900 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00134 Cpe-Chr4:1214884 Cpe15g00900 Cpe-Chr15:8663631 4.79E-17 transposed
Cpe16g00035 Cpe-Chr16:450020 Cpe15g00900 Cpe-Chr15:8663631 3.04E-15 transposed
Cpe15g00900 Cpe-Chr15:8663631 Cpe04g00863 Cpe-Chr4:7933630 1.45E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1134 . Blo13g00598 . . . . Bma08g00820 . . . . . . . . Cpe04g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe15g00900 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010209 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00900 Cpe_Chr15 FPKM 0.186413 0.190308 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0