Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00903 ATGGCCGCACTTCCGCTCTTCAGATCTGCACCCGCCGCTTCTATTGTTCAAGCATCTCTTTCCTCCTCTTCTGCCGATCAGTTTACGACCTCGTACGTTAATTTGAATTCTTCGAAGTTTCAATCGAGCATTTTCGGTGCCCATGGTCCAAGCGGTTCACTTTCCTTGCAGCTTCGTAGAACCCAGAATATTCAGCCTATTAGAGCTACAGCCACTGAAATGCCTCCGACGGTTCAGAAACCAAGGAGCGGTGGAAAGACAAGGATCGGAATCAATGGTTTTGGACGTATTGGAAGGTTGGTATTGCGGATTGCAACCTCGAGGGATGATATTGATGTAGTTGCAGTTAATGACCCTTTTGTTGATGCAAAGTACATGGCATACATGTTCAAGTTTGATTCTACACATGGTAATTTTAAGGGCACGATTAACATTGTGGATGATTCAACTTTGGAAATCAATGGGAAACAAATAAAAGTTTTAAGTCAAAGGGATCCAGCAGAAATTCCTTGGGGCGAGTTTGGGGTTGAGTTTGTTGTTGAATCCTCTGGGGTTTTCACAACGACAAACAAGGCATCGGCGCACTTGAAGGTGGTTCATGAGGTTTTTGGTATCGCAGAAGGTTTGATGACCACCGTGCATGCAACTACAGCTACTCAAAAAACTGTTGATGGCCCCTCAATGAAGGATTGGCGTGGGGGTCGTGGAGCTGCACAAAATATCATCCCGAGTTCTACCGGTGCTGCAAAGGCTGTGGGAAAAGTTCTTCCTGAGCTCAACGGAAAACTTACGGGGATGGCATTTCGTGTTCCAACACCTAATGTATCTGTTGTGGACTTGACTTGTAAACTAGAGAAGAGCGCTTCTTATGAAGATGTCAAGGCTGCAATCAAGTATGCCTCAGAAGGCCCACTTCAGGGTATCCTCGGTTACACAGATGAGGACGTTGTCTCAAATGATTTTGTTGGGGACTCAAGGTCAAGTATATTTGATGCAAAGGCCGGAATAGGTCTCAGCGACTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAGTGGGGATACAGCAACCGAGTGTTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAAGAAGTGA 1122 46.17 MAALPLFRSAPAASIVQASLSSSSADQFTTSYVNLNSSKFQSSIFGAHGPSGSLSLQLRRTQNIQPIRATATEMPPTVQKPRSGGKTRIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFKGTINIVDDSTLEINGKQIKVLSQRDPAEIPWGEFGVEFVVESSGVFTTTNKASAHLKVVHEVFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCKLEKSASYEDVKAAIKYASEGPLQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLVSWYDNEWGYSNRVLDLIEHMALVAAKK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8679143 8683278 + Cp4.1LG15g09080.1 Cpe15g00903 482361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00903 373 Gene3D - 352 364 - -
Cpe15g00903 373 Gene3D Dihydrodipicolinate Reductase; domain 2 201 351 - -
Cpe15g00903 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 207 IPR036291 -
Cpe15g00903 373 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 197 372 - -
Cpe15g00903 373 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 7 197 - -
Cpe15g00903 373 Gene3D - 79 200 - -
Cpe15g00903 373 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 188 IPR020828 GO:0051287
Cpe15g00903 373 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 305 320 IPR020831 GO:0016620
Cpe15g00903 373 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 208 224 IPR020831 GO:0016620
Cpe15g00903 373 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 265 282 IPR020831 GO:0016620
Cpe15g00903 373 SMART gp_dh_n_7 87 207 IPR020828 GO:0051287
Cpe15g00903 373 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 196 349 IPR020829 GO:0016620
Cpe15g00903 373 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 7 197 IPR020831 GO:0016620
Cpe15g00903 373 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 197 372 IPR020831 GO:0016620
Cpe15g00903 373 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 188 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00903 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101215988 613.224
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe15g00903 Cpe16g00709 CCT
Cpe04g00865 Cpe15g00903 CCT
Cpe05g01033 Cpe15g00903 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01033 Cpe-Chr5:6773286 Cpe15g00903 Cpe-Chr15:8679143 0 dispersed
Cpe06g00010 Cpe-Chr6:37214 Cpe15g00903 Cpe-Chr15:8679143 8.77E-80 dispersed
Cpe09g00978 Cpe-Chr9:8696190 Cpe15g00903 Cpe-Chr15:8679143 3.63E-123 dispersed
Cpe15g00903 Cpe-Chr15:8679143 Cpe20g00323 Cpe-Chr20:1817586 7.39E-123 dispersed
Cpe15g00903 Cpe-Chr15:8679143 Cpe16g00709 Cpe-Chr16:7255572 0 wgd
Cpe15g00903 Cpe-Chr15:8679143 Cpe04g00865 Cpe-Chr4:7943557 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00903 Cpe_Chr15 FPKM 16.515896 16.759233 11.203967 10.657287 16.021774 11.631658 19.6723 13.692016 16.536478 16.250435