Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00907 ATGGATTTCGCCGGACTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAGAAGTGTGGAGAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTATTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCAACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAGTTATGATGGCTGCCATTTCGTTTACACGTAG 825 59.52 MDFAGLRRLLLLLLLLLLLVSTSTTHFFTPCDARSVERRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPATPLPPSSPFTYISSPPPPPFYYLPPLLPPPTPTYGSPPSFTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFVYT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8701164 8702418 + Cp4.1LG15g09070.1 Cpe15g00907 482365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00907 274 PANTHER EXTENSIN-LIKE 142 273 - -
Cpe15g00907 274 Pfam X8 domain 187 258 IPR012946 -
Cpe15g00907 274 Gene3D - 182 272 - -
Cpe15g00907 274 SMART X8_cls 187 271 IPR012946 -
Cpe15g00907 274 PANTHER BETA-1,3 GLUCANASE 142 273 IPR044788 -
Cpe15g00907 274 PRINTS Proline rich extensin signature 155 176 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 101 113 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 142 154 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 118 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00638 Cpe-Chr2:3885295 Cpe15g00907 Cpe-Chr15:8701164 8.19E-37 dispersed
Cpe15g00907 Cpe-Chr15:8701164 Cpe16g00133 Cpe-Chr16:3078770 2.85E-37 dispersed
Cpe15g00907 Cpe-Chr15:8701164 Cpe06g00545 Cpe-Chr6:3277868 7.33E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00907 - - cmos:111455466 219.164