Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00907 ATGGATTTCGCCGGACTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTATCCACTTCTACCACTCATTTCTTCACTCCCTGTGATGCTAGAAGTGTGGAGAGAAGGTCCAAGAAACTCCAGCTGGCGAAATACTTGGATGTAATTGGGCAAAAGGTGAGCCACGTGGATGGTGGGACCAATTCCCAACCTTACGTGAGCTCCCCGTTTACTCTCCCGCCATTCGATTCGTTGCCGGACAACGCGCCCCCTTATTGCTCCTATCCCCCAGCTACTCCTCTGCCTCCCTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCGCCCTTCTATTATCTTCCCCCACTGCTCCCACCTCCCACCCCAACCTACGGCTCTCCCCCCAGCTTCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCCAGCCCACCCTCTCCCACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAGCCACCCGTCATTTACCCTCCCCCGAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTTTGGTGCGTGGCCAAGCCCTCCGTGCCTGACCCAATCATTCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGACACCATTCTCCCCAACGGACCCTGCTTTCTGCCCAACACACTCATCGCCCACGCTTCCTACGCCTTCAATAGCTATTGGCAGAGAACCAAGGTCGGCGGCGGCACCTGTGAGTTCGGCGGTACCGCCATGCTTGTCACCGTGGATCCCAGTTATGATGGCTGCCATTTCGTTTACACGTAG 825 59.52 MDFAGLRRLLLLLLLLLLLVSTSTTHFFTPCDARSVERRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPATPLPPSSPFTYISSPPPPPFYYLPPLLPPPTPTYGSPPSFTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFVYT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8701164 8702418 + Cp4.1LG15g09070.1 Cpe15g00907 482365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00907 274 PANTHER EXTENSIN-LIKE 142 273 - -
Cpe15g00907 274 Pfam X8 domain 187 258 IPR012946 -
Cpe15g00907 274 Gene3D - 182 272 - -
Cpe15g00907 274 SMART X8_cls 187 271 IPR012946 -
Cpe15g00907 274 PANTHER BETA-1,3 GLUCANASE 142 273 IPR044788 -
Cpe15g00907 274 PRINTS Proline rich extensin signature 155 176 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 101 113 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 142 154 - -
Cpe15g00907 274 PRINTS Proline rich extensin signature 118 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00907 - - - cmos:111455466 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00638 Cpe-Chr2:3885295 Cpe15g00907 Cpe-Chr15:8701164 8.19E-37 dispersed
Cpe15g00907 Cpe-Chr15:8701164 Cpe16g00133 Cpe-Chr16:3078770 2.85E-37 dispersed
Cpe15g00907 Cpe-Chr15:8701164 Cpe06g00545 Cpe-Chr6:3277868 7.33E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00907 Cpe_Chr15 FPKM 54.513721 59.552315 36.640835 37.209999 40.640732 42.638214 40.097118 38.267265 34.200695 34.210991