Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00908 ATGGAGGACGGCTTTGCAGCTGAAAAGCTCTTCAATCAGGGATTTTCCTACACCTACGACGATGTCATCTTCCTTCCTCACTACATTGACTTCCCCACTGACGCCGTCCAGCTCGCTACCCGACTCACCCGCAATATCTCCCTCTCTATCCCCTGCGTCTCTTCCCCCATGGACACCGTCACCGAAGCCTACATGGCTTCCGCCATGGCTGCTCTTGGTGGCATCGGTATCATCCACTCCAATTCCCCTGCCGCCCAACAGGCTGCCATGGTTCATGCCGCCAAGGCCCGCCGTGTTCCAATTTTGTCTAATCCTGTTTTCAAGTCCCCATCCGATCGGATTGACTCGGAGGAGGATTTTGCTTCTTCACCCTTTGTTTTGGTTACTGAGTCAGGTACCTCCAAGTCGAAGCTCTTGGGCCATGTCTCCTACGCGGACTGGACCTCCCAGGCGAACAAGGATGTGAAAATATATGATTATATGGTTAATTCGGGGGCTTCAGTTCCGTGGAACTATGATTTAGCGCAAGTGGACGCGTTCTTGGCGGAGAAGAAGAAGGACTTTGTGCCGCTGTTGAAGGACGATGAAATTGTGGATGTTGTAACGAAGTCAGAAGTGGAGAGAATCAAAAGTTATCCTAAACTGGGCGTTGGCTCGGTTGCGGCCGATGGTTCCTGGCTGGTAGGGGCTTCGATTGGAACGAGGGAGCATGACAAGGAGAGGTTGAAGCTTTTGGTGCAGGCCGGTGTAAACGCAGTGGTGTTAGATAGTTCACAGGGAAACTCCAGTTATCAAATTGATATGATAAAGTATGTGAAGCGGACATATCCAGAATTGGACGTGATTGGCGGGAATGTGGTTACGATGGCACAGGCCCAGAATTTGATTCAGGCTGGTGTCGACGGCTTGCGGATTGGGATGGGTTCTGGATCTATCTGTACCACGCAGGAGGTTTGTGCGGTTGGACGAGGACAGGCGACTGCGGTTTACAAGGTCTCATTAGTTGCTTCGCAAAGTGGCGTGCCTGTCATCGCTGATGGTGGAATTTCAAACTCTGGGCATATTGTTAAGGCTTTAGTTCTTGGTGCATCCACGGTAATGATGGGAAGTTTCTTGGCTGGAAGCACCGAGGCCCCTGGGGCCTTCGAAACTAAGAATGGTCAGCGTGTGAAGAAGTATCGTGGGATGGGCTCTTTAGAAGCAATGACCAAAGGTAGTGATGCCAGGTACTTGGGGGATACTGCAACCCTTAAGATAGCTCAAGGGGTTGTTGGAGCAGTTGCTGATAAGGGTTCAGTCTTGAAGTTCATACCCTACACTATGCAAGCAGTCAAGCAAGGTTTCCAAGATCTTGGTGCTTCCTCCATCAAATCTGCCCATGACCTCTTAAGCTCAAAGATTTTAAGGCTAGAGGTACGCTCAGGGGCAGCACAGGTCGAAGGTGGCATTCATGGACTGGTGTCGTATGAAAAGAGATCGTTTTGA 1485 50.57 MEDGFAAEKLFNQGFSYTYDDVIFLPHYIDFPTDAVQLATRLTRNISLSIPCVSSPMDTVTEAYMASAMAALGGIGIIHSNSPAAQQAAMVHAAKARRVPILSNPVFKSPSDRIDSEEDFASSPFVLVTESGTSKSKLLGHVSYADWTSQANKDVKIYDYMVNSGASVPWNYDLAQVDAFLAEKKKDFVPLLKDDEIVDVVTKSEVERIKSYPKLGVGSVAADGSWLVGASIGTREHDKERLKLLVQAGVNAVVLDSSQGNSSYQIDMIKYVKRTYPELDVIGGNVVTMAQAQNLIQAGVDGLRIGMGSGSICTTQEVCAVGRGQATAVYKVSLVASQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAFETKNGQRVKKYRGMGSLEAMTKGSDARYLGDTATLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSIKSAHDLLSSKILRLEVRSGAAQVEGGIHGLVSYEKRSF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8703370 8706914 + Cp4.1LG15g09020.1 Cpe15g00908 482366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00908 494 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 303 315 IPR015875 GO:0016491
Cpe15g00908 494 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 2 494 IPR005990 GO:0003938|GO:0006164
Cpe15g00908 494 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 7 493 - -
Cpe15g00908 494 Gene3D Aldolase class I 4 494 IPR013785 -
Cpe15g00908 494 SMART IMPDH_2 15 484 - -
Cpe15g00908 494 TIGRFAM IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 16 460 IPR005990 GO:0003938|GO:0006164
Cpe15g00908 494 SUPERFAMILY CBS-domain pair 125 207 IPR046342 -
Cpe15g00908 494 CDD IMPDH 16 461 IPR001093 GO:0003824
Cpe15g00908 494 PIRSF IMPDH 4 494 IPR005990 GO:0003938|GO:0006164
Cpe15g00908 494 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 1 2 494 - -
Cpe15g00908 494 Pfam IMP dehydrogenase / GMP reductase domain 17 484 IPR001093 GO:0003824
Cpe15g00908 494 Hamap Inosine-5'-monophosphate dehydrogenase [guaB]. 16 492 IPR005990 GO:0003938|GO:0006164
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00908 K00088 IMPDH, guaB; IMP dehydrogenase [EC:1.1.1.205] - csv:101217193 915.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1164 . Blo13g00604 . . . . Bma08g00823 . . . . . . . Sed04g3557 . . Bhi05g01988 Tan02g0021 Cmetu01g0138 Lac12g0035 Hepe02g0009 . . . . . . . . . . . . . . Csa07g01216 . . . . . . . . . . . . . . . . . Cpe15g00908 . . . . . . . . . . . . . . . . . Chy01g00847 Cme01g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007875 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00908 Cpe_Chr15 FPKM 1.587067 1.959805 7.430241 6.027838 5.422761 5.957109 5.379876 5.451059 4.179771 4.411714