Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00909 ATGTATCTTGCCCGACCTACCGGCGTTGCCCGTTTTGCTGCCTCCTCCTCCTCCTCAGCTTCCCTATTCCCTGGAGTGGATGTGGACACAACAACTAAAACTGGAGCTTTGCACTTTGAAGAAACAAAAGAAAGAATTAAGAAATTGTTCGACAAGGTTGAACTTTCAGTTTCTGCATATGATACTGCATGGGTGGCAATGGTTCCTTCTCCAAACTCTCTCAACCAACCTCTTTTCCCCGAGTGTATAAACTGGGTATTAGATAGTCAACATGCTGATGGCTCATGGGGCCTACTCCACAACGATCAGTTGCTGATGAAGGCCAATCTCTTATCTACATTAGCATGTGTTCTTACTCTTAAGCGGTGGAATATTGGGCATGATCATATGAGCAAGGCCCTTGATTTTATCAAGTCTAATATAGCTTCAGCTACTGATGAGAACCAACGTTCTCCTGTGGGATTTGACATTATTTTCCCTGGCATGATTGAGTATGCTAAAGACTTGAATTTGAATCTACCCTTGGCACCGACGAACGTGGATGCCTTGGTTCGAAAGAAAGAGTTGGAGCTTAGAAGAAGCAACTCTGAAGGTGGAAAAGCCTATTTAGCGTATGTTTCAGAAGGAATTGGAAAGTTACAGGACTGGGATATGGTCATGCAATATCAAAGGAAGAATGGATCACTGTTTAATTCTCCATCCACTACGGCAGCGGCTTTTATGCATAGAAATGATGATGGCTGTTTTGATTATCTTCGCTCACTCTTACAAAAGTTTGATGGCTCAGTTCCCACAATATATCCTCTTGATATATATGCTCGATTACACATGGTTGATAGCCTTCAAAAATTCGGAATTGCTCGGCATTTCAAAGAGGAGATTAGAAGCGTATTAGATGAAACTTACAGGTGTTGGATGCAAGGAGAGGAAAATATATTCTTAGATGCTTCAACTTGTGCAATGGCCTTTCGAATGTTACGTGTTGAAGGATATGATGTTTCTTCAGACCAGTTGACTCAATTTTCAGAAGATCTCTTTCCCAATTGCCTTGGAGGATATTTAAAAGACTTCGGTGCCTCGCTGGAGTTATATAAGGCCTCTCAGATTATCACTCACCCCGATGAATCTGTTCTGGAAAATATAAACTCTTGGACTAGTCGTTTCCTGAAGCATGGATTATCTAGTGATTCAGTTTGGTCTGATAGAACCGATAGTGTCGTTAAACAAGAGGCTGTTAATGCTCTTGAGTTCCCCTATAATGCAACTCTAGAACGCCTAATAAGTAAGAGGGCAATGGAAAGTTACAGTGGAGACATTGTGAGGCTTTCAAAATCGCCATATGCCTGCTTAAATTTTGGCCATCAAGATTTTCTGGAACTTGCTGTAGAGGATTTCAATACCCTGCAACGCATTCATCTTAAAGAACTGGAAGAGCTTCAAAGATGGGTGGTTGAAAACAAATTGGACGAGTTGAAATTTTTCAGACTGCACCTAGGGTACTGCTATTTTGCTGCGGCAGCGACCCTTACTGATCCTGAACTTCATGATGCTCGCATAGCATGGGCACAAAATGGTGTGCTCACAACCGTGGTTGATGATTTCTATGATGGTGGAGGATCTGAAGAGGAATTGGATAACCTTATAGAATTGGTGGAAAAGTGGGATCCTGATGGGGAAGTGGGTTACTGTTCCAAGAACGTTGAGATTGTATTTCTTGCACTTCACAGCACAGTTTGTGAAATAGGAAGAAGAGCTTTAGTATGGCAAGGACGCAGTGTGATGAGGAATGTTATCGATGTCTGGTTGGCTCTGCTGAAGGTGATGAGAAAGGAAGCTGAATGGTCGACAAATAAGGTAGTGCCATCAATGGGTGAATATATGGAACAAGCCCATGTATCATTCGCGTTGGGACCTATAATCCTTCCAATGCTCTTCTTTGTTGGACCTAAGCTCTCAGAGGAAATGATTGGAAGCTGTGAATACCAGAAGTTATATAAGCTGATGAGCACTGCTGGTCGCCTTAAGAATGATATTCGATCTTTCGATAGAGAATCCAAGGAGGGAAAGCTGAATTCTCTGTCTCTGTGGATGATTGATGGCGGTGGTAATGTCACCAAAGAGGAGGCCATTGAAGCAAGTAAAGGGGATTTTGAGAGGGCGATAAGAGAATTGCTGGGGTTAGTTTTGCAGGAGAACACTACAATTCCAAGAGCTTGTTGA 2220 42.43 MYLARPTGVARFAASSSSSASLFPGVDVDTTTKTGALHFEETKERIKKLFDKVELSVSAYDTAWVAMVPSPNSLNQPLFPECINWVLDSQHADGSWGLLHNDQLLMKANLLSTLACVLTLKRWNIGHDHMSKALDFIKSNIASATDENQRSPVGFDIIFPGMIEYAKDLNLNLPLAPTNVDALVRKKELELRRSNSEGGKAYLAYVSEGIGKLQDWDMVMQYQRKNGSLFNSPSTTAAAFMHRNDDGCFDYLRSLLQKFDGSVPTIYPLDIYARLHMVDSLQKFGIARHFKEEIRSVLDETYRCWMQGEENIFLDASTCAMAFRMLRVEGYDVSSDQLTQFSEDLFPNCLGGYLKDFGASLELYKASQIITHPDESVLENINSWTSRFLKHGLSSDSVWSDRTDSVVKQEAVNALEFPYNATLERLISKRAMESYSGDIVRLSKSPYACLNFGHQDFLELAVEDFNTLQRIHLKELEELQRWVVENKLDELKFFRLHLGYCYFAAAATLTDPELHDARIAWAQNGVLTTVVDDFYDGGGSEEELDNLIELVEKWDPDGEVGYCSKNVEIVFLALHSTVCEIGRRALVWQGRSVMRNVIDVWLALLKVMRKEAEWSTNKVVPSMGEYMEQAHVSFALGPIILPMLFFVGPKLSEEMIGSCEYQKLYKLMSTAGRLKNDIRSFDRESKEGKLNSLSLWMIDGGGNVTKEEAIEASKGDFERAIRELLGLVLQENTTIPRAC 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8705304 8711494 - Cp4.1LG15g09130.1 Cpe15g00909 482367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00909 739 Gene3D - 56 256 - -
Cpe15g00909 739 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 49 739 - -
Cpe15g00909 739 Pfam Terpene synthase family, metal binding domain 458 720 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cpe15g00909 739 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 225 437 IPR008930 -
Cpe15g00909 739 CDD Terpene_cyclase_plant_C1 267 739 IPR044814 GO:0010333|GO:0016102
Cpe15g00909 739 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 49 739 - -
Cpe15g00909 739 Pfam Terpene synthase, N-terminal domain 215 400 IPR001906 GO:0010333|GO:0016829
Cpe15g00909 739 Gene3D - 49 465 IPR036965 GO:0010333|GO:0016829
Cpe15g00909 739 SFLD Terpene Cyclase Like 1 N-term 29 447 - -
Cpe15g00909 739 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 59 242 IPR008930 -
Cpe15g00909 739 SUPERFAMILY Terpenoid synthases 455 737 IPR008949 -
Cpe15g00909 739 Gene3D Farnesyl Diphosphate Synthase 468 739 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00909 K04121 E4.2.3.19; ent-kaurene synthase [EC:4.2.3.19] - csv:101217426 1210.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00030 Cpe-Chr15:204858 Cpe15g00909 Cpe-Chr15:8705304 9.33E-84 dispersed
Cpe15g00909 Cpe-Chr15:8705304 Cpe20g00395 Cpe-Chr20:2218181 4.21E-18 dispersed
Cpe15g00909 Cpe-Chr15:8705304 Cpe05g00022 Cpe-Chr5:86617 4.81E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1165 Blo04g00457 . . . . . Bma08g00824 . . . . . . . . . . Bhi05g01987 . . . . . . . . . . . . . . . . . . Csa07g01217 . . . . . . Bpe15g00924 . Bma03g00490 . . . . . . . . Cpe15g00909 . . . . . . . . . . . . . . . . . Chy01g00846 Cme01g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003981 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 2 1 1 1 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00909 Cpe_Chr15 FPKM 23.290644 25.938356 16.879915 19.509237 14.629759 11.693656 13.399946 23.985495 24.343594 24.900692