Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00911 ATGGCGACGGCGGTTGTGATTGGGGGCGGCGGGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAAGTCGAGGAGAAGGCAAATTTGGTACTCTCAGCCGCTGACTCCGTTGATGGAAGGGCCGGATCCGCAGTTCCAAGACCAAGAAGCCAACAAGAAAGACTCCTCCGCTTTCAACTGGGAATTCCTCCGCGACTGGTTCAAGATCCAGCGCAACCTCCCGCCCTCTCTCCCCCCATCCTCCTTCACCAACGTTCCCAATTCCAAGACCCAAGATTTGAAGCTTTTGCTCGGCGTTCTCGCATGCCCTCTCGCTCCCATTCCTCTCCACTCCCATTCCAATTCCCCTCCACAATCCCATTTCCCACGCGATACTCCTCTTGAAACTTCCGTGGCTCATTATATCATTCAGCAATACTTGGCCGCCACCGGATGTCTCAAACAGCAGAAGTGCGCCAAGAACATGTACACCACGGGAAGCGTGAAGATGATTCGCTGCGAAACAGAGGTTTCCTCAGGTAAATCTGTGAAGACGGTAGGGACAAGATGCGAGGACACCGGCTGCTTTGTTCTTTGGCAAATGCTACCGGGTATGTGGTCCCTCGAATTGGTAGTCGGTGGCAGTAAGGTGGTGGCCGGCAGCGACGGCAACACCGTCTGGCGCCACACTCCCTGGCTCGGCACTCATGCCGCCAAAGGCCCCCAACGACCCCTCCGTCGCATTATTCAGGGGCTTGACCCAAAGGGAACAGCGAGACTGTTCGAGAAGGCCCAATGCCTGGGAGAGAAGCGGATCGGGGAAGACGAGTGCTTTGTGCTGAAGGTGTCGGCGGAGCGGGAGGCAGTGATGGAGCGGAACGAGGGGCCTGCGGAGGTGATAAGGCACGTGCTGTACGGCTACTTCTGCCAGAAGAGCGGAGTGCTGGTGTACCTGGAGGACTCCCACCTGACCAGGGTTCAGACGGAAGGCGACGCTGTGTACTGGGAAACCACCATCGGAAGCAGCATCGGGGACTACAGGGACGTGGACGGGGTCCTCATCGCTCATCGGGGCAGGTCCATAGCCACTGTCTTCAAGTTTGGGGAAATGTCCACACAATTTAGCAGGACCCGTATGGAAGAGGTTTGGAGTATTGACGACGTGATGTTCAACGTGGCTGGCCTTAGCATCGACTACTTTCTTCCTCCCGCTGATATTTGTGATACCCTTCACTCTCACTCCTCCCATTCTCCATGA 1254 55.66 MATAVVIGGGGSSSSSSSSSSSSSSSSKSRRRQIWYSQPLTPLMEGPDPQFQDQEANKKDSSAFNWEFLRDWFKIQRNLPPSLPPSSFTNVPNSKTQDLKLLLGVLACPLAPIPLHSHSNSPPQSHFPRDTPLETSVAHYIIQQYLAATGCLKQQKCAKNMYTTGSVKMIRCETEVSSGKSVKTVGTRCEDTGCFVLWQMLPGMWSLELVVGGSKVVAGSDGNTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKGTARLFEKAQCLGEKRIGEDECFVLKVSAEREAVMERNEGPAEVIRHVLYGYFCQKSGVLVYLEDSHLTRVQTEGDAVYWETTIGSSIGDYRDVDGVLIAHRGRSIATVFKFGEMSTQFSRTRMEEVWSIDDVMFNVAGLSIDYFLPPADICDTLHSHSSHSP 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8716946 8720053 - Cp4.1LG15g09140.1 Cpe15g00911 482369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00911 417 Pfam Protein of unknown function (DUF620) 161 402 IPR006873 -
Cpe15g00911 417 MobiDBLite consensus disorder prediction 1 57 - -
Cpe15g00911 417 PANTHER PLANT/T8K14-16 PROTEIN 28 408 - -
Cpe15g00911 417 PANTHER LIPASE 28 408 IPR006873 -
Cpe15g00911 417 MobiDBLite consensus disorder prediction 8 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00911 - - - csv:101217200 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00414 Cpe-Chr1:2389970 Cpe15g00911 Cpe-Chr15:8716946 1.70E-130 dispersed
Cpe02g00209 Cpe-Chr2:1075359 Cpe15g00911 Cpe-Chr15:8716946 8.07E-127 dispersed
Cpe04g01488 Cpe-Chr4:11810989 Cpe15g00911 Cpe-Chr15:8716946 0 dispersed
Cpe11g00130 Cpe-Chr11:713704 Cpe15g00911 Cpe-Chr15:8716946 1.90E-127 dispersed
Cpe14g00276 Cpe-Chr14:1598104 Cpe15g00911 Cpe-Chr15:8716946 7.14E-133 dispersed
Cpe15g00911 Cpe-Chr15:8716946 Cpe13g01081 Cpe-Chr13:8736309 2.10E-105 dispersed
Cpe19g00804 Cpe-Chr19:6048607 Cpe15g00911 Cpe-Chr15:8716946 7.36E-79 dispersed
Cpe15g00911 Cpe-Chr15:8716946 Cpe15g00912 Cpe-Chr15:8720689 7.94E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1172 Blo04g00454 Blo13g00606 . . . . Bma08g00826 . . . . . . . . . . Bhi05g01979 . . Lac12g0029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe15g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007448 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00911 Cpe_Chr15 FPKM 2.627635 3.145391 1.823592 1.434127 2.087152 3.07036 2.272412 1.951692 1.919327 1.609513