Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00913 ATGGCCCACTTATTCATCTCCGACGAGGAGTTCTCTCGGCACTCCAACGACGCTGCTTTTATTGCCGAGAAGGCCGATGCCTTCATCCAAGGTCTATATAGCGAGCTCGAGACCGTCAGAGCCCAAGCTGATGCTGCTTCAATCACTGCGGAGCAGACTTGTTCTCTTCTTGATCAGAAGTTCCTCTCTCTTTCCGCTGAGTTCTCTGACCTCCAGTCTCAAAATGCACAACTTCAAACGACCCTCGAACTTAGACTCTCCGAGCTTGCCGAAGTCAAGTCCCAAACGCATCAGCTTAATCTACTTTCCATTGGTAAGGATGGGGAGATAGAGAGGTTAAATACAGAGTTATCTGAGTTGCATAAATCAAAAAGGCAGTTGATGGAGCTTATTGAGCACAAGGACTTGGAAATTGGTGAAAAAGATTCCACTATAAAGAGTTATCTTGATAAGATTGTCAATTTGTCTGAGACAGCTGCTCAAAGAGAAGCCCGTATCAGTGAGATCGACATGGAGTTGGTGCGCTCCCGGGCTGAATTCGCTCATCTTTCACAGGTTGAGAGACAGTTGGATGAATGCTCTAGCACCTTAAAATGGAACAAGGATAGTGTGAAAGAACTTGAGATGAAGCTAACATCTGCACAGGAGGAATTGTGTTCGTCAAGAAAACTTGCTGCAGAAAACGAGGAACGTCTTTGTGCTGAAATATCAACAGTCAATAAGCTTGTTGAACTTTACAAAGAAAGTTCTGAGGAGTGGTCTAAGAAGGCAACAGAACTCGAGGGTGTCATAAAAGCCTTGGAGGTGGCTGCAGATTTGAAAGTGAAACTGGAAAAATGTGAAGCAGAGATTGAACTTAGTAGGAAAAAGAACGAACTCACTCTTTGTCCCATCAGCAGCTTTGCTCCAGATGTTTTGATAAATCCGAAGGAAAGTAGTGATGTGGTTGATGACTATCACAAATTCGAACCCAGGGTACCTGTGGGTGTTTCTGGGACAGCTTTAGCGGCTTCACTGTTGCGTGATGGTTGGAGTTTGGCCAAAATGTATGCGAAGTACCAAGAGACTGTTGATGCTTTGCGGCATGAGCAGATGGGAAGGAAAGAAGCTGAGGCAGTTCTGCAGAGGGTGCTATGTGAATTAGAGGATAAAGCAGAAGTCATTTTAGAGGAAAGAGCCGAACATGAGGGAATGATCGAGTCATATTCCTTGTTAAACCAAAAATTGCAGCATTCTATTTCTGAACAGGCAATTTTGGAGAAATCTGTTCAAGAATTGAAGGCTGTTTTGAAGAGACATGAACGTGATTACATGTTAATTCAGAGAGAGAACGTTGACCTTTCAAGACAGGTTACAATTCTTCTAAAGGAATGTCGAGACGTACAACTTCGCTGTGGATCTGCTGGACATGATGTTCTTGAGAATCTTTCAACACCTACATCCTTTCAAATCAATGTGGAGTCTGATGCGGATAGAGTTATATCTGAATATCTTTTAACCTTCAAGGACATAAATGGATTAGTTGAACAGAATGTCCAGCTGAGAAGCCTCGTACGTAAACTTTCTGTGCAGCTTCAAGATACAGAGCTTGATTTCAAGGAGAAACTGGAGGCTGAACTGAAAAGTAAAACTCAAGAAGCTGCATCTAGAGTTGAAGCAGTGTTGCAAAAAGTTGAAGAGCAGGGACAGATGATTGAGTCCCTTCATGCCTCCGTTGCCATGTACAAAAGGCTGTATGAAGAGGAGCAGAAGCGTAGTTTGCCTCGCTCCCACTCTGCTGGAGTTGCTCTAGCAGATTTTTGTAGGAAGGAACTCAAGTTTGTTTCTGAAGATTCTCAGGAAGACACAAAGGCTGCTCTGGACCAGGCTTCTAAACGAGTAAGATCTCTTGAGGAAGAGCTTGAAAAATCTAGAAGCGAGATAAATTTAGTAAGGACTGAACGTAACAAGTTTGAACTCGAGTCAGGTTTTGCCAAAGAAAAATTGGCTAGTTTCATGAAGGAATTTGAACAACAGAGAGTGGAAATGAATGGTGTGTTGGCTCGTAATGTGGAGTTCTCACAACTCTTAGTGGACTACCAAGGAAAACTGCGGAAAGTTTCAGAATCCTTGCACAATGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTGTCCATCTTAAAGTCTGAAAAGGAGTTGTTATCAAATGCTGAAAAGAGAGCACATGATGAAATACGAAATTTATCTGAAAGATTATTCCGCGTGCAGGCTTCTCTGGATACCATTCGAAGTGTTGAAGAAGTTCATGAGGAGGCTAGGGTTGTAGAAAGGAGGAAACTGGAGGAACATGCTAAGCAACTTGAGCGTACATCTCTTATGATATACTCTGACTTCCATGTCGATGATAAATTGTGCTTGAAGAGGGAATGGGCAGAGGCAAAGAAAGAGTTGCAAGAAGAAAGGGACAATGTTCGAACTCTCACTCTTGATCGTGAGAAGACTTTAAAGAATGCGATGAGTCATGTTGAGGACATGGGAAAGGAACTAGCAAACGCACTACATGCCACTGCTGCTGCTGAGGCGAGAGCTGCCGTCGCTGAGGCCAAACTGTTCGATCTGGAGAAGAAAATTAGTTCTTCAGCTAACCAGGTTGGCATAGATTTGCATAGAACGGAGGCAGAAATTAAGAAATTTAAAGAAGAAGCACAAGCTTGTAAAGAACATATGCTACAGTACAAGAGCATTGCACAGGTAAATGAAGAAGCTGTGAAACAGATGGAATGTGCTCATGAATCTTTCAAGATTGAGGCTGAGAAAATGAAGAAATCATTGGAAGTCGAACTTCTTCAGCTTAGAGAGAGGGTTGCTGAACTTGAAAATGAATCTATTTTAAAATCTCAAGAAATAGCTTCTGCTGCTAGATTGAAGGAAGAGGCTATTGCATCTTCCCTGGCAGATGTTAGAAATCTGAATGAAGAAAATGCTGCAAAAACGTCTAAGATTCTGGAAATGGAAATTCAGATATCCTATTTAAAAGAAGACTTGGAAAGGGAACAGCAAAAATGGCGTACTGCTCAAGCTAATTACGAAAGACAGGTTATTCTCCAGTCAGAGACGATTCAGGAGCTGACAAAAACATCACAAGCTTTGGCTTCTTTACAAGAGGAAGCAGCTGAGCTTCGTAAATTAGCTGATGCTTACAAAACAGAAAATGAAGAACTGAAGGCCAAGTGGGAAGGTGGGAAAGTAGCACTTGAGGATTTTAAGAATAAAGCTGACAAGGCATACAATGAACTCAATGAACAGAATAAAATTCTGCATGCTAAACTTGAGGCATTCCACATTCGATTGGCGGAGAAAGATCAAAAGTTGGCTGGAGTTTCTTCCGAACTTAATACTGAGATGGTTGGGGATTCTGGTATGCAGAGTGTGGTTAGTTACCTCAGACGGACAAAAGAAATTGCTGAAGTAGAGATCTCCTTGCTAAAGAAGGACAAGTTGAGATTGCAGTCACAATTAGAAAGTGCTCTTAAAGCTGTGGAGAGTGCACAAGCTTCACTTAATGCTGAGCGTCAAAGCTCAAAAGCATTATTGTTAACCGAGGAGGAAATTAAATCTTTACAACTTCAGGTTAGGGAGATGAACTTGCTTCGTGAAAGCAATATCCAACTGCGAGAAGAGAATAAGCACAATTTTGAGGAATGCCAGAAACTACGTGAAGAATTTAGAAAGGCTAAATGTGAAACAGAGAACTTTGAGAGCATGCTGAAGATGAGACAAGTGGAGGTGGAAGCCTGCAAAATGGAAATTGAATCGCAGAAAGTGGAGAAGGCTCATCTTGAAAGCAGAGTCTCTGAGTTGCTTGAAAAATCTAAGAATATAGATTATGAAGATTATAATCGTGTGAAGGATGATGTTCAAAGAATGCAGATGGAGCTGAATGAGAAAGATGCAGAAATTGCAAAAGTCAAAATGCTTATCACTGAAAGACAGGAATCGATATCTCAATTGGAGCAAGACCTTTCTAGTTGCAGATTTGAACTGAAGGAAAGGGAAAAGAAACTGAATGATATTCAACATATTGAGGCCAATCTGAGGACAGATATGGAGAAACAGAAGAAATTCTTTTCTCAGTTTAAGCGGAAGCTTGAAATTGTCTCAAAGGAGAAGGATGAATTGGGCAAAGAAAATCAAGCTCTTTTGAGGCAGTTGGAAGACATTAAACAAGTGAATATTGTCGGGAAAAGGTCCACTGGAGATTCAACTGGTGAGCAGACCATAGAAGAAAAGGACACTAAAATTCAGGAAAAATCAAAGATCTTAAATGATTTGGAGAAGCATAAGGGAAACTTGAAGCAAGCTTCTGATGAACTTGAGAAGCTTAGACAATCTAAAAGCAATCTTTCGGAGGATGCTTTACCTCAGCCACTTTCAGGGATTGGCTTGGACGATCTTGCTTCTACCTACGTTTTAGCTGCTGAGAATTTTGAGAAGACTGTGCAGTCAGTTTTGACTGATCTTGGAGCTCAGAATGCTACTTCAGAGGTTTCTTTGGTCACAGATGCTTTGGTACAAAGTAGTACAGGTCCTGATGTTCCTCTCCAAACGCCTGATGTTGCAGTGCCTGTGGCTCCTGTAACAACCAACTTTCCTGCCAAAGTCCTAGAAGAACGGGAAAAGAAAGGTCAATTATCCAAGGCAAAAGTAGAAACGCGTAAAGCAGGGCGAAAGTTGGTTCGACCTCGTCTTGGAAAACCAGGAGGGTCTCTGGGTGATATAGACATGTCAACATCAGAATTACCAAACAGTGAAAGCAAGCGTGCAACTTCTGGAAAATCAGAAACTGAAAGTGAATCTACTACATCAGCCCATCAGCTGGCTCGCAAGCGTGTAGCAACAGCTTCTGAATTGCATGAACATGCAGTTATCCCTGGGGAGAGCATTACTGAAATGGCAGCTCCTGTCATGAAGAAGGCTAAAGGGTCAGATACCTTGGCTGATGACGTTGGTGGACCATCTTCTACCTCTCTGGAAAGTCTCAAAACTCAGTCGCCCTTGGAAGAAGTTCCTGATGTTTGTGAGTTTCCTCATGGTTCAAGTGAGGATGCAGCTGATGTTGAAAAAGAGGTTGAAATTGCAGGGGAGAAGGCTGATAGGCCAAAAGAACTATCATCTGATGGATCTATCAGCCATGAGGAGATACACACTGACAGGATGGATGAAAATCTGGACAAGCAGATTGTAGCGGTGTCAGATGATGGGTTAAAAGATCAAGCTGAACCAGACAACTGGCATCTAACTTCAGAGATTGGAAGCGAGAGAGAGGAAGGTGAGGTGGCCCCTGAAGTTATGGAACTGGAGGGTGCCAATAATGTTGAAAGCATTGAAATAGGAGACGATCATATTGAGCCAGTTGCAACTCCTGATGCCTCCCCATCTAGAGTTGATGATGATGCGATGGCTGTCACAGACATGGAGATTGGCGAGATAAACTCCCCTGAGATTCAAAATGAAGAAAAGAATGATGAGGGTGATGCAGCTGATGAAACTTCCGAAATTTTAGATAAGCCAACTGATAGTAACCAGATTGATATGGAGAGTGATCAGGCTGTTGAAACCACCTCAGTAGCTACTGAGAACGTTTCGAGTACACCGCCAGAAATAAATGATTCGAAACAAGGTAGCCCTATTGTTGCAAAACGGTCGTCTCCTGTCGGTAGTAGCACGTCTACTACAATAAATTTGCAAGAGCGAGCCAAGGAAAGAGCTATGCTGAGACAGGCTGGAGTTGTTTCTTCATTGGATAGACGCCCTGTGAGAGGATTGCGTGGCCGGGGTGGTCGGATAGAGCGAGGTGGCCGTGGTCAACGATCTGGACGGGGACCACCTGGGGAATCAGGTAGGAGTTAA 5892 42.72 MAHLFISDEEFSRHSNDAAFIAEKADAFIQGLYSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQTHQLNLLSIGKDGEIERLNTELSELHKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEIDMELVRSRAEFAHLSQVERQLDECSSTLKWNKDSVKELEMKLTSAQEELCSSRKLAAENEERLCAEISTVNKLVELYKESSEEWSKKATELEGVIKALEVAADLKVKLEKCEAEIELSRKKNELTLCPISSFAPDVLINPKESSDVVDDYHKFEPRVPVGVSGTALAASLLRDGWSLAKMYAKYQETVDALRHEQMGRKEAEAVLQRVLCELEDKAEVILEERAEHEGMIESYSLLNQKLQHSISEQAILEKSVQELKAVLKRHERDYMLIQRENVDLSRQVTILLKECRDVQLRCGSAGHDVLENLSTPTSFQINVESDADRVISEYLLTFKDINGLVEQNVQLRSLVRKLSVQLQDTELDFKEKLEAELKSKTQEAASRVEAVLQKVEEQGQMIESLHASVAMYKRLYEEEQKRSLPRSHSAGVALADFCRKELKFVSEDSQEDTKAALDQASKRVRSLEEELEKSRSEINLVRTERNKFELESGFAKEKLASFMKEFEQQRVEMNGVLARNVEFSQLLVDYQGKLRKVSESLHNADEQSRKLSIEVSILKSEKELLSNAEKRAHDEIRNLSERLFRVQASLDTIRSVEEVHEEARVVERRKLEEHAKQLERTSLMIYSDFHVDDKLCLKREWAEAKKELQEERDNVRTLTLDREKTLKNAMSHVEDMGKELANALHATAAAEARAAVAEAKLFDLEKKISSSANQVGIDLHRTEAEIKKFKEEAQACKEHMLQYKSIAQVNEEAVKQMECAHESFKIEAEKMKKSLEVELLQLRERVAELENESILKSQEIASAARLKEEAIASSLADVRNLNEENAAKTSKILEMEIQISYLKEDLEREQQKWRTAQANYERQVILQSETIQELTKTSQALASLQEEAAELRKLADAYKTENEELKAKWEGGKVALEDFKNKADKAYNELNEQNKILHAKLEAFHIRLAEKDQKLAGVSSELNTEMVGDSGMQSVVSYLRRTKEIAEVEISLLKKDKLRLQSQLESALKAVESAQASLNAERQSSKALLLTEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREEFRKAKCETENFESMLKMRQVEVEACKMEIESQKVEKAHLESRVSELLEKSKNIDYEDYNRVKDDVQRMQMELNEKDAEIAKVKMLITERQESISQLEQDLSSCRFELKEREKKLNDIQHIEANLRTDMEKQKKFFSQFKRKLEIVSKEKDELGKENQALLRQLEDIKQVNIVGKRSTGDSTGEQTIEEKDTKIQEKSKILNDLEKHKGNLKQASDELEKLRQSKSNLSEDALPQPLSGIGLDDLASTYVLAAENFEKTVQSVLTDLGAQNATSEVSLVTDALVQSSTGPDVPLQTPDVAVPVAPVTTNFPAKVLEEREKKGQLSKAKVETRKAGRKLVRPRLGKPGGSLGDIDMSTSELPNSESKRATSGKSETESESTTSAHQLARKRVATASELHEHAVIPGESITEMAAPVMKKAKGSDTLADDVGGPSSTSLESLKTQSPLEEVPDVCEFPHGSSEDAADVEKEVEIAGEKADRPKELSSDGSISHEEIHTDRMDENLDKQIVAVSDDGLKDQAEPDNWHLTSEIGSEREEGEVAPEVMELEGANNVESIEIGDDHIEPVATPDASPSRVDDDAMAVTDMEIGEINSPEIQNEEKNDEGDAADETSEILDKPTDSNQIDMESDQAVETTSVATENVSSTPPEINDSKQGSPIVAKRSSPVGSSTSTTINLQERAKERAMLRQAGVVSSLDRRPVRGLRGRGGRIERGGRGQRSGRGPPGESGRS 1963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8722754 8765514 + Cp4.1LG15g09050.1 Cpe15g00913 482371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00913 1963 Coils Coil 1328 1348 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1551 1571 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1791 1810 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1551 1774 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1688 1774 - -
Cpe15g00913 1963 Coils Coil 416 450 - -
Cpe15g00913 1963 PANTHER NUCLEOPROTEIN TPR 1 1946 - -
Cpe15g00913 1963 Coils Coil 797 821 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1822 1963 - -
Cpe15g00913 1963 Pfam TPR/MLP1/MLP2-like protein 981 1106 IPR012929 GO:0006606
Cpe15g00913 1963 PANTHER NUCLEOPROTEIN TPR-RELATED 1 1946 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1589 1622 - -
Cpe15g00913 1963 Coils Coil 981 1026 - -
Cpe15g00913 1963 Coils Coil 1037 1071 - -
Cpe15g00913 1963 Coils Coil 270 290 - -
Cpe15g00913 1963 Coils Coil 1191 1211 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1932 1949 - -
Cpe15g00913 1963 Coils Coil 928 962 - -
Cpe15g00913 1963 Coils Coil 110 130 - -
Cpe15g00913 1963 Coils Coil 850 870 - -
Cpe15g00913 1963 Coils Coil 1215 1249 - -
Cpe15g00913 1963 Coils Coil 541 561 - -
Cpe15g00913 1963 Coils Coil 1079 1103 - -
Cpe15g00913 1963 Coils Coil 721 745 - -
Cpe15g00913 1963 Coils Coil 1257 1284 - -
Cpe15g00913 1963 Coils Coil 875 902 - -
Cpe15g00913 1963 Coils Coil 1377 1404 - -
Cpe15g00913 1963 Coils Coil 1290 1320 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1662 1677 - -
Cpe15g00913 1963 Coils Coil 613 654 - -
Cpe15g00913 1963 MobiDBLite consensus disorder prediction 1857 1911 - -
Cpe15g00913 1963 Coils Coil 1146 1180 - -
Cpe15g00913 1963 Coils Coil 1421 1465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00913 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - csv:101216510 3001.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00913 Cpe_Chr15 FPKM 6.144144 7.897125 4.867737 5.458989 2.344683 3.231292 4.390617 13.080785 10.683044 18.116022