Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00914 ATGGCTAATCAATTGCACGGTTACAGCTCTGTCTACGGCGCGGGACCTGCCACTTCAACTGCCACTGCCACTGCCACTACACCTCTTCCCGCCGCATACTCGTCTTCCCGCTCCCTCTCCGACATCGTCTCCGGCCGTTACCTCGTGTCAGACTCGCTGGCCTCCGGTTTCTCCATTAAGCACTCTTTTATTGATCGTGGTACCACCATGTATTCGACCCAGAATGAAGCCCTTAGGTTATCCGCCGCCGACATTGTCCCAAGAACGTCGCATTCGGTCTCTCAATTTTCTTGGCCGGGTTCTGATGCTGCTACTGCTCTGGACTCTGTTGTTTCTGGCATCCAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCATGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAACTAGTAGTGAAGATCTCCCAGAAAGACTTGGGGAGCCAGATTGTCCATACTTTTTGAAAACTCAACGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAGAGATACGTCTGAATCTGTGGGTGCTGAAAAATCTGATGTTTCGTCCTTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACCGGAAATTGCAAATTTCGTGTTAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCTGGGGAAGTTAATGGAAATAGCGAACAAACTTTGATGGAAGCTAATACAGAAGGAAGAATTGGAGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCTCCGGCATTAATACACAATTCTAAAGGACTTCCAATTAGACCGGGTGAAGTGGATTGTCCATTCTACTTGAAAACGGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCAGCAATGGTCTCAGCTGCTAATATGAATATTGGAATTTCTAATCCTTCTAATGCTATTTATCAAGCTGTTGATCCCAGATTGATTCAGCCACTGTTGGGATCCAGCTCAAGTATTTACCCTCGAAGACCTGGGCAGATAGAATGTGACGATGCCATAATTTGTCCATATTATCTCAAAACTGGTACCTGCAAGTATGGGTCTACTTGCAAATTTGACCACCCACCTCCTGGAGAAGTGATGGCAATGGTAGCAGTACAACTTGTTCCAGGAAAAGAAGGTGAAGAACGGATAGATGAACCAACCAGTTGA 1437 45.16 MANQLHGYSSVYGAGPATSTATATATTPLPAAYSSSRSLSDIVSGRYLVSDSLASGFSIKHSFIDRGTTMYSTQNEALRLSAADIVPRTSHSVSQFSWPGSDAATALDSVVSGIQRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLHVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEVPQITSSEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPRDTSESVGAEKSDVSSLPERPSEPLCAFYVKTGNCKFRVNCKFHHPKDIQILSGEVNGNSEQTLMEANTEGRIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVSAANMNIGISNPSNAIYQAVDPRLIQPLLGSSSSIYPRRPGQIECDDAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMVAVQLVPGKEGEERIDEPTS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8766417 8775052 + Cp4.1LG15g09110.1 Cpe15g00914 482372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00914 478 PANTHER CCCH ZINC FINGER/TIS11-RELATED 72 451 IPR045877 GO:0003729
Cpe15g00914 478 PANTHER CCCH ZINC FINGER/TIS11-RELATED 414 460 IPR045877 GO:0003729
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 264 288 IPR036855 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 163 190 IPR036855 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 428 451 IPR036855 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 344 367 IPR036855 GO:0046872
Cpe15g00914 478 Gene3D - 340 464 - -
Cpe15g00914 478 MobiDBLite consensus disorder prediction 241 261 - -
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 189 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 451 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Cpe15g00914 478 Gene3D - 128 202 - -
Cpe15g00914 478 Gene3D - 213 296 - -
Cpe15g00914 478 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 72 451 - -
Cpe15g00914 478 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 414 460 - -
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 220 243 IPR036855 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 425 451 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 261 288 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00914 Cpe-Chr15:8766417 Cpe16g00747 Cpe-Chr16:7509290 9.75E-07 dispersed
Cpe15g00914 Cpe-Chr15:8766417 Cpe05g01531 Cpe-Chr5:10541426 4.53E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50662 PF00642 zf-CCCH 2.90E-09 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00914 - - cmax:111468399 853.203