Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00914 ATGGCTAATCAATTGCACGGTTACAGCTCTGTCTACGGCGCGGGACCTGCCACTTCAACTGCCACTGCCACTGCCACTACACCTCTTCCCGCCGCATACTCGTCTTCCCGCTCCCTCTCCGACATCGTCTCCGGCCGTTACCTCGTGTCAGACTCGCTGGCCTCCGGTTTCTCCATTAAGCACTCTTTTATTGATCGTGGTACCACCATGTATTCGACCCAGAATGAAGCCCTTAGGTTATCCGCCGCCGACATTGTCCCAAGAACGTCGCATTCGGTCTCTCAATTTTCTTGGCCGGGTTCTGATGCTGCTACTGCTCTGGACTCTGTTGTTTCTGGCATCCAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCATGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGATGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAACTAGTAGTGAAGATCTCCCAGAAAGACTTGGGGAGCCAGATTGTCCATACTTTTTGAAAACTCAACGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAGAGATACGTCTGAATCTGTGGGTGCTGAAAAATCTGATGTTTCGTCCTTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATGTTAAGACCGGAAATTGCAAATTTCGTGTTAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCTGGGGAAGTTAATGGAAATAGCGAACAAACTTTGATGGAAGCTAATACAGAAGGAAGAATTGGAGACTTCAAGCTTGTTAAGCCTCCTGTTTCATTTTCTCCGGCATTAATACACAATTCTAAAGGACTTCCAATTAGACCGGGTGAAGTGGATTGTCCATTCTACTTGAAAACGGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCAGCAATGGTCTCAGCTGCTAATATGAATATTGGAATTTCTAATCCTTCTAATGCTATTTATCAAGCTGTTGATCCCAGATTGATTCAGCCACTGTTGGGATCCAGCTCAAGTATTTACCCTCGAAGACCTGGGCAGATAGAATGTGACGATGCCATAATTTGTCCATATTATCTCAAAACTGGTACCTGCAAGTATGGGTCTACTTGCAAATTTGACCACCCACCTCCTGGAGAAGTGATGGCAATGGTAGCAGTACAACTTGTTCCAGGAAAAGAAGGTGAAGAACGGATAGATGAACCAACCAGTTGA 1437 45.16 MANQLHGYSSVYGAGPATSTATATATTPLPAAYSSSRSLSDIVSGRYLVSDSLASGFSIKHSFIDRGTTMYSTQNEALRLSAADIVPRTSHSVSQFSWPGSDAATALDSVVSGIQRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLHVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEVPQITSSEDLPERLGEPDCPYFLKTQRCKFGSRCKFNHPRDTSESVGAEKSDVSSLPERPSEPLCAFYVKTGNCKFRVNCKFHHPKDIQILSGEVNGNSEQTLMEANTEGRIGDFKLVKPPVSFSPALIHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVSAANMNIGISNPSNAIYQAVDPRLIQPLLGSSSSIYPRRPGQIECDDAIICPYYLKTGTCKYGSTCKFDHPPPGEVMAMVAVQLVPGKEGEERIDEPTS 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8766417 8775052 + Cp4.1LG15g09110.1 Cpe15g00914 482372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00914 478 PANTHER CCCH ZINC FINGER/TIS11-RELATED 72 451 IPR045877 GO:0003729
Cpe15g00914 478 PANTHER CCCH ZINC FINGER/TIS11-RELATED 414 460 IPR045877 GO:0003729
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 264 288 IPR036855 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 163 190 IPR036855 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 428 451 IPR036855 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 344 367 IPR036855 GO:0046872
Cpe15g00914 478 Gene3D - 340 464 - -
Cpe15g00914 478 MobiDBLite consensus disorder prediction 241 261 - -
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 189 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 451 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Cpe15g00914 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Cpe15g00914 478 Gene3D - 128 202 - -
Cpe15g00914 478 Gene3D - 213 296 - -
Cpe15g00914 478 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 72 451 - -
Cpe15g00914 478 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 414 460 - -
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Cpe15g00914 478 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Cpe15g00914 478 SUPERFAMILY CCCH zinc finger 220 243 IPR036855 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 425 451 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Cpe15g00914 478 SMART c3hfinal6 261 288 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00914 - - - cmax:111468399 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00914 Cpe-Chr15:8766417 Cpe16g00747 Cpe-Chr16:7509290 9.75E-07 dispersed
Cpe15g00914 Cpe-Chr15:8766417 Cpe05g01531 Cpe-Chr5:10541426 4.53E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50662 PF00642 zf-CCCH 2.90E-09 CL0537 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00914 Cpe_Chr15 FPKM 43.422436 47.700474 33.168827 32.051624 29.527981 32.007225 30.33473 54.396862 52.042713 49.334476