Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00917 CACCCGCCGCCCCAGAGAGAGAAGCAAGGGAGGCACAGGAAGCCAGGAGGGAAAACTGCTTACATACTCCAACTATTGGATTTTAAGAACCTGAGGAATATGAAGTACGTATTGGTTACGGGAGGTGTTGTTAGTGGACTGGGCAAAGGGGTCACTGCTAGCAGTATCGGAGTCCTCCTTAAAGCTTGCGGTCTTCGAGTTACTTCCATTAAGATTGATCCTTATCTAAATACAGATGCTGGTACCATGTCTCCTTTTGAGCACGGCGAAGTGTTCGTCTTGGATGACGGTGGTGAGGTTGACCTGGACCTTGGAAACTATGAACGATTTTTGGACATCACACTAACTCGTGATAACAACATCACAACCGGAAAAATATACCAGTCTGTGATTGACAAGGAGAGAAGAGGTGATTACCTGGGAAAGACTGTTCAGGTTGTTCCACACATTACAGATGCTATCCAAGAATGGATTGAGCGTGTAGCAATGATACCAGTTGATAGTAAAGAAGGTCCAGCTGATGTGTGTGTAATTGAATTGGGTGGCACCATAGGAGATATTGAATCGATGCCATTTATTGAAGCACTTGGCCAATTTTCGTACCGCGTAGGTCCTGGAAATTTCTGCTTGGTTCATGTTAGCCTTGTTCCGGTCCTCAATGTAGTTGGTGAACAGAAAACTAAGCCTACTCAACACAGTGTTCGAGGTCTAAGAGGACTGGGATTGGTCCCAAATATTTTAGCTTGCCGCAGTTCAAAGGCAGAGAATATAATCACTCTCTATGATGTGCCAAATATTTGGCATATTCCTCTGCTATTAAGAGACCAGAAGGCTCATAATGCACTCTTAAAAGGACTGAATCTTCACAGTGTAGCAGGAGAACCAGATTTAGATGAATGGACGTCTAGGACAAGGTTATATGATAAGTTACATGATTCCGTCAAAATTGCTATGGTTGGTAAATACACAGGCCTTTCAGATTCGTACCTCTCTGTGTTAAAGGCCCTTCTACATGCTTCTGTCGTCAGCAATAGAAAGCTTACTGTAGAATGGGTTCCAGCTGGGGATCTTGAAGATATTTCTGCCAAAGAGGCCCCCGAGGTTTATGCAGCTGCGTGGGAACTTTTAAAGGGTGCTGACGGTGTTCTAGTTCCAGGAGGTTTTGGTGATAGGGGAGTACAAGGGAAAATTCTAGCAGCCAAATATGCCCGAGAGAATGGGATTCCCTTTCTAGGCATATGCCTGGGGATGCAAATTGCTGTCATTGAATTTTCCAGGTCTGTTCTTGGTATACATGATGCTAACAGCACAGAGTTCGATCCTGAAACCGCAAACCCTTGTGTGGTTTTTATGCCTGAGGGTTCAAAGACTCATATGGGAGGAACTATGCGTTTAGGGTCAAGGAGAACTTACTTTAATGTTATGGACTGCAAATCTGCAAAGTTGTATGGCAATGTAAAGTTTGTTGATGAGCGACATAGGCATAGATATGAGGTCAATCCTGATATGGTGTGTCAACTTGAAAATGCCGGTTTATCTTTTGTTGGCAGTGATGAAACAGGTCGTCGTATGGAGATTGTCGAGTTAGATGCCCATCCATACTTCGTGGGAGTTCAGTTTCATCCTGAATTTAAGTCCAGACCAGGGAAACCCTCCCCGCTCTTTTTAGGGCTCATTAAGGCAGCATGTGGCCAATTAGACGCCTTTCTACAAAAAAATGGAAGTGTAAGCCAATTTTCGGCAGACACAACAAGCAATGGACACGCCAAGATAAAGATTCTGCAAAATGGACACTCCCCGAAGTCAGGGAATGGGTTATTGAATGCTGCATATGGCAATGCAGTAGTTTGCCCTTGGAAGGATGTCAACCACTGTTAA 1878 44.25 HPPPQREKQGRHRKPGGKTAYILQLLDFKNLRNMKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDITLTRDNNITTGKIYQSVIDKERRGDYLGKTVQVVPHITDAIQEWIERVAMIPVDSKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLVPNILACRSSKAENIITLYDVPNIWHIPLLLRDQKAHNALLKGLNLHSVAGEPDLDEWTSRTRLYDKLHDSVKIAMVGKYTGLSDSYLSVLKALLHASVVSNRKLTVEWVPAGDLEDISAKEAPEVYAAAWELLKGADGVLVPGGFGDRGVQGKILAAKYARENGIPFLGICLGMQIAVIEFSRSVLGIHDANSTEFDPETANPCVVFMPEGSKTHMGGTMRLGSRRTYFNVMDCKSAKLYGNVKFVDERHRHRYEVNPDMVCQLENAGLSFVGSDETGRRMEIVELDAHPYFVGVQFHPEFKSRPGKPSPLFLGLIKAACGQLDAFLQKNGSVSQFSADTTSNGHAKIKILQNGHSPKSGNGLLNAAYGNAVVCPWKDVNHC 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8797513 8804468 + Cp4.1LG15g09100.1 Cpe15g00917 482375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00917 625 SUPERFAMILY Class I glutamine amidotransferase-like 313 565 IPR029062 -
Cpe15g00917 625 TIGRFAM PyrG: CTP synthase 33 561 IPR004468 GO:0003883|GO:0006221
Cpe15g00917 625 PANTHER CTP SYNTHASE 34 585 - -
Cpe15g00917 625 Pfam CTP synthase N-terminus 35 288 IPR017456 GO:0003883|GO:0006221
Cpe15g00917 625 Gene3D - 311 577 IPR029062 -
Cpe15g00917 625 CDD CTPS_N 35 284 IPR017456 GO:0003883|GO:0006221
Cpe15g00917 625 Gene3D - 26 308 IPR027417 -
Cpe15g00917 625 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 315 568 - -
Cpe15g00917 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 288 IPR027417 -
Cpe15g00917 625 CDD GATase1_CTP_Synthase 314 559 IPR033828 GO:0003883|GO:0006241
Cpe15g00917 625 PANTHER CTP SYNTHASE 34 585 IPR004468 GO:0003883|GO:0006221
Cpe15g00917 625 Pfam Glutamine amidotransferase class-I 325 561 IPR017926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00917 K01937 pyrG, CTPS; CTP synthase [EC:6.3.4.2] - csv:101213614 1094.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00917 Cpe-Chr15:8797513 Cpe19g01221 Cpe-Chr19:8220034 0 dispersed
Cpe15g00917 Cpe-Chr15:8797513 Cpe12g00903 Cpe-Chr12:7818567 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01233 . . . . . . . . . . . . . . . . . Cpe15g00917 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000805 1 2 2 1 2 4 4 4 4 2 4 3 3 3 2 2 3 4 4 4 3 3 3 3 3 3 3 6 3 3 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00917 Cpe_Chr15 FPKM 2.285495 3.218131 1.868276 2.353291 4.28857 4.319811 4.797499 0.508581 0.527309 0.619403