Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00033 ATGTCATCGTCGAATTCACCATGTGCGGCGTGTAAATTTCTTCGGCGAAAATGCACACAAGAATGCGTGTTCGCGCCGTACTTCCCACCGGATCAGCCGCAGAAATTCGCTAATGTTCACAAGGTGTTTGGCGCAAGCAACGTGGCGAAACTTTTGAATGAGTTGAACGCGTCGCAGCGTGAGGACGCAGTGAACTCATTAGCCTATGAGGCAGAGTTTCGTCTGCGAGACCCAGTGTACGGATGTGTCGGCCTTATCTCTGTCCTACAACACAAGCTAAAGCAAATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCCTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCTCAACAAATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCACCACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTTCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGANTGTCTGATCGATCTGATGATGCCTTTTTTCTTTTTCTTTTTTTTCTTTCTCACAAATGGTGCAATATTATTTGGTAG 1056 50.0 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIPSSGGGGSSQQMLIRESPHQQQQHHHQIQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQQQQQQQQQQQHSPSQRQHELLRFNGFDPAGVGAGSGAGAGGFNNQMNSPSDLTLGTFPDNSYQIQTQPEHSHSHSHHHHPLQVQLFPQPQQTQLDQSQQQQQQPHPHRXSDRSDDAFFLFLFFLSHKWCNIIW 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 429658 430713 + Cp4.1LG16g00270.1 Cpe16g00033 482408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00033 351 MobiDBLite consensus disorder prediction 210 329 - -
Cpe16g00033 351 MobiDBLite consensus disorder prediction 258 287 - -
Cpe16g00033 351 MobiDBLite consensus disorder prediction 153 188 - -
Cpe16g00033 351 MobiDBLite consensus disorder prediction 156 188 - -
Cpe16g00033 351 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cpe16g00033 351 MobiDBLite consensus disorder prediction 302 324 - -
Cpe16g00033 351 Coils Coil 86 106 - -
Cpe16g00033 351 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cpe16g00033 351 MobiDBLite consensus disorder prediction 210 237 - -
Cpe16g00033 351 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 315 - -
Cpe16g00033 351 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00664 Cpe-Chr11:4450407 Cpe16g00033 Cpe-Chr16:429658 1.74E-59 dispersed
Cpe13g01047 Cpe-Chr13:8546645 Cpe16g00033 Cpe-Chr16:429658 1.05E-46 dispersed
Cpe16g00033 Cpe-Chr16:429658 Cpe18g00859 Cpe-Chr18:7908787 1.98E-51 dispersed
Cpe16g00033 Cpe-Chr16:429658 Cpe05g01077 Cpe-Chr5:7130076 3.16E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50669 PF03195 LOB 1.90E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00033 - - cmos:111434896 459.529