Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00053 ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCACCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCACCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATGAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTAA 663 40.27 MGSKSQLLLNPQQALFEDQDHQTPPISQMGFFNFPSNPFENPNFSTSNNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTMKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 726252 728718 + Cp4.1LG16g00060.1 Cpe16g00053 482428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00053 220 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00053 220 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 41 214 - -
Cpe16g00053 220 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 214 IPR044810 GO:0003700
Cpe16g00053 220 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00053 220 SUPERFAMILY WRKY DNA-binding domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe16g00053 220 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00053 220 Gene3D WRKY domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01094 Cpe16g00053 CCT
Cpe10g00373 Cpe16g00053 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00656 Cpe-Chr8:4472570 Cpe16g00053 Cpe-Chr16:726252 4.26E-18 dispersed
Cpe16g00053 Cpe-Chr16:726252 Cpe12g00331 Cpe-Chr12:2190645 4.31E-36 dispersed
Cpe10g00373 Cpe-Chr10:2206612 Cpe16g00053 Cpe-Chr16:726252 8.08E-59 wgd
Cpe16g00053 Cpe-Chr16:726252 Cpe05g01094 Cpe-Chr5:7267769 7.53E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50671 PF03106 WRKY 3.50E-24 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00053 - - cmos:111434882 399.438