Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00053 | ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCACCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCACCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATGAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTAA | 663 | 40.27 | MGSKSQLLLNPQQALFEDQDHQTPPISQMGFFNFPSNPFENPNFSTSNNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTMKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 726252 | 728718 | + | Cp4.1LG16g00060.1 | Cpe16g00053 | 482428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00053 | 220 | ProSiteProfiles | WRKY domain profile. | 138 | 203 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe16g00053 | 220 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 41 | 214 | - | - | |
Cpe16g00053 | 220 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 41 | 214 | IPR044810 | GO:0003700 | |
Cpe16g00053 | 220 | SMART | WRKY_cls | 143 | 202 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe16g00053 | 220 | SUPERFAMILY | WRKY DNA-binding domain | 136 | 202 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe16g00053 | 220 | Pfam | WRKY DNA -binding domain | 144 | 200 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe16g00053 | 220 | Gene3D | WRKY domain | 130 | 196 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g01094 | Cpe16g00053 | CCT | |
Cpe10g00373 | Cpe16g00053 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00656 | Cpe-Chr8:4472570 | Cpe16g00053 | Cpe-Chr16:726252 | 4.26E-18 | dispersed | |
Cpe16g00053 | Cpe-Chr16:726252 | Cpe12g00331 | Cpe-Chr12:2190645 | 4.31E-36 | dispersed | |
Cpe10g00373 | Cpe-Chr10:2206612 | Cpe16g00053 | Cpe-Chr16:726252 | 8.08E-59 | wgd | |
Cpe16g00053 | Cpe-Chr16:726252 | Cpe05g01094 | Cpe-Chr5:7267769 | 7.53E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50671 | PF03106 | WRKY | 3.50E-24 | CL0274 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00053 | - | - | cmos:111434882 | 399.438 |