Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00064 ATGAAATATTGCATTGATGCTCTCGCTCTCACGAGCTCGGTGATTTTCCTAGCCGCTTTTGCAAGCGTCTTTGCTGCTACACCACCTATTCCTGCCGAAAAATCGAAACTAGACGCTTGGTATTCCAAAAATGTGAAGCCCTTAACCGATCGCAAGGGGGAGCTTGATCCAGCCCTTGTGGCTGCTGAAGAACGCGCTACCGTGGTTAAAGTAAGAGCCGATGGAAGTGGAGATTTCAAGACGGTCACCGAAGCTATCACTAGCGTTCCTCCTGGTAACACCAAACGTGTCGTGATTTGGATCGGAGGAGGAGTTTATAAAGAGAAGCTTACGATTGATAGGACTAGGCCATTTATTACCCTTTATGGCTCCCCTAATAATATGCCTAACTTGACATTTGACGGAGATGCTAAAACATACGGCACCGTTTACAGTGCATCTTTGAGCGTTGACTCTGATTATTTCGTTGCTGCCAATCTCGTCATTGAGAATTCATCTCCAAGACCAGATGGAAAAAGGAAAGGAGCTCAAGCATTAGCAGCTCGACTAAGAGGGAACAAAGCCGCAGTTTACAATTGCAAATTCATAGGGTTTCAAGACACCCTATGCGACGACGATGGCTTACATGTCTACAAGGACTGCTTCATTCAAGGCACCGTGGACTTCGTCTTCGGCAAGGGAACATCGCTTTTCTTGAACACGCAGCTCGACGTGGTGGTGACCGACGACGAATTGGGAGTGATAACAGCGCATTCAAGAGAAAAGAAAACGGACCCGAGCGGGTATGTGTTCGCGCATTGCAGCATTACAGGCACGGGCGGGAGGAACACCTTTTTGGGAAGATCTTGGAGGCCATGGTCTAGAGTTGTGTATGCCTACACCACCATGGCTGACATTATTAACCGTGAAGGGTGGAACGACATGAGAATCCCGGCTTTCCACAGTACGGTGTTCTTCGGAGAATATAAGTGTTCGGGGCCGGGATCGGAGACGAGCGGCCGAGTTGATTTCAGCAAGCAGTTGAGTAATAATGAAGTGAGGCCGTTTATCAACCTTGGGTTCGTGCAGAGTGAAAAGTGGCTGCTTCCTCCTCCCCAACTCTAG 1104 48.55 MKYCIDALALTSSVIFLAAFASVFAATPPIPAEKSKLDAWYSKNVKPLTDRKGELDPALVAAEERATVVKVRADGSGDFKTVTEAITSVPPGNTKRVVIWIGGGVYKEKLTIDRTRPFITLYGSPNNMPNLTFDGDAKTYGTVYSASLSVDSDYFVAANLVIENSSPRPDGKRKGAQALAARLRGNKAAVYNCKFIGFQDTLCDDDGLHVYKDCFIQGTVDFVFGKGTSLFLNTQLDVVVTDDELGVITAHSREKKTDPSGYVFAHCSITGTGGRNTFLGRSWRPWSRVVYAYTTMADIINREGWNDMRIPAFHSTVFFGEYKCSGPGSETSGRVDFSKQLSNNEVRPFINLGFVQSEKWLLPPPQL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1270114 1272192 + Cp4.1LG16g00640.1 Cpe16g00064 482439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00064 367 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cpe16g00064 367 Pfam Pectinesterase 69 356 IPR000070 GO:0030599|GO:0042545
Cpe16g00064 367 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cpe16g00064 367 PANTHER PECTINESTERASE 63-RELATED 34 362 - -
Cpe16g00064 367 Gene3D - 63 363 IPR012334 -
Cpe16g00064 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00064 Cpe-Chr16:1270114 Cpe16g00839 Cpe-Chr16:8056789 0 dispersed
Cpe16g00064 Cpe-Chr16:1270114 Cpe04g01091 Cpe-Chr4:9501814 2.48E-74 transposed
Cpe16g00064 Cpe-Chr16:1270114 Cpe18g00395 Cpe-Chr18:5184289 2.87E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00064 K01051 - csv:101205095 532.717