Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00066 ATGATGAGGCGCTTCTCCTCTGCAACGTTCTCGCTTTCCTCTCTGTATTCTTCTTCTTCCTCCTCCTCCCTTCCTTTTCCACCACGCGTTCTCCTTCTTAGCTTATCTCAATTCTCAACTTCTTCTTCGTCTTTGAGGCGGCACGACGAAGAGTCTCGAAATGTGAGGGTTTCGGTCTGGTGGGACTTCGAGAATTGCAACATTCCCGCGGCTGTGAACGTCTTTAAGGTCGCCCATTTGATCACTGCCGCGGTAAGGGCCAATGGCATCAAAGGCCCTGTTCAGATTACTGCTTTCGGTGACATTTTACAGCTCTCCAGGGCCAACCAAGAGGCTCTCTCTTCTACTGGGATTAGCCTGACCCACATTCCAAAAGGTGGTAAGAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAATCCTCCACCAGCACATCTTTTTCTAATTTCTGGCGACAGGGACTTTGCCAGCATTTTGCACCGCTTAAGAATGAATAATTACAATGTGTTGCTAGCAAGCCCTGACACTGCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGAATACTTTGATTAGAGGGGAAAATCTAGTCGGAAGGCATTTTAATCGACCACCTGATGGTCCGTATGGTTCTTGGTATGGCCATTATAAGGTTCCTCTTGAAGACCCATATCCAGTTAATGAGCAACCGTCTTCTTTACGAGCCGAGGTTTCCGAGCTCAGTTCAGACCCTAAGCCTCGTCCCATTCCAAAGACAGTCATTAGGCAATTACACAACATTTTGAAGTTGCATCCCAAGGGAATCCTTATTACAGAACTTCGCTCCGAGTTGGGAAAGAGTATGGATAAGGACTTTTATGGTTACAAAAAGTTTTATCGCTTTCTTTTGTCAGTGCCACACATTTTAAAGCTTCAAACAAATGGTGATGGCCAATGTATTGTCTGTCCAGTCACTCCAAGGCCCATAGAACCATTAGAGTGCAGTAGAGGTACATCTAGTGATGGCAATGGAGGGCAGGATCCTAATATGAGAGCAAATTTAAATAATAATGATTCCTCAACGGAATCGATCAGTGAATCAGTCCTTCCATCCAGTGAACGAAGCGCCGAAGACAGACAATTGAAGGTGAAACCATCTTCTGAATTTGGTATGTCTATTGGTGAAGGTATGGAAGGGGAATCATCAAGATTCCCGGTTTCTGAGCCACATGCTATAGAAGATTCAAAGCAAACCAGTCAATTTGAAGCTGAGAGTAGTAAGAATCCTTCAATTGGACAGCTTTCGGAGTCCGAGATGGGATTTTTTAGAAGAATATGGAGAAGGCTTTTAAGCAATAATAACTATATTTCTGAAAATGGAAGCCATAATATTTCTGAAAAATGCTCTACATCAGATGATACTTCCAAGCATAAAAGTTGTAGTGGCCTCCTTGGGATGGCAAAAACTGTGAAGCCAATGAGTCAAGATGCTAATTGTGTGCATGCAGTTTCAAATTCACCTGATCATGAGTCTGCTAAGCTTCAGAAAACAGCCGTAGTTGCTAGTGAATATGATGTTAAATCTAGTTCTAATCCAGGATTACTTGGTAGTATTAGAAATTGGTTCAAGTTTTGGGGAAAGAATACTGAAAACGGCGAAGTCAGCGAGCGTTCTTGTGAACGTAACCAGTTAAAGAATCAATCTGAGAATCACCATCTTTTTTCCAGTAATTCTTTTTGGCAAGATATCCAATCCTTTATGGAAACACCTAAAGGAGTTCAGATTATTTCGCGGTCGAAAACCAGGTCGGAGATAGCTGAAAATCTGCTAGAGGGAGGGCCTCCGGTTCTTAAATCTTTAAGCATTAGTGATCTGTTCGACTTTTTGGAATTGTTAATATCAGATAAGAAATGGGTTGTGGAATGCCCGTCGGAAGCAAATCCTTTTAAGCTCACTCTCTCTGTTGCTAGGAAAAGCTCTTGCACGAAACAGTTGCATCATGCAAATGGGTTGGCATCAATCTTTATGAACAAAGTGTCACAGTGCAGCTTGCAGGGATCTGCAGAACATGATTCAGATTCTGATAAGAAAAATGAAAATATTCCTCAAGCTGGATATTATACAACTATGACTAGAAGAAAGTTTCCAGAGAGGACGAGAAGCGAGATATTAGGCGACTGTCGAAAGCTCGTGGATGAGATCTTGAGGGATCACCCCGAAGGATATAAGATGGGGGCTTTCAGAAAACTGTTTCTTGAGAAGTATGGGTATCATCTTAACTTGCAGAAGCTTGGTTACCATAAGTTGGCGTCCTTGCTACAGATAATGCCTGGAGTGGCAGTAGCATCCACATTGATAGTTCCCACCAGTAAGGCCCCAAAAGTTTCGAAGTTGGAAACCGCTCTTCTCAGCGATCCTGAGAAAAAGACGTCCCATGTCGTAGTAACCTCGGGTAATGACTCATCTGTCCTGCCTAGAAAGGATGACGATTTTGAGTCCTCCTGGGGAGAATTGGGTCCAGCCTGCACAGATTGGAGCAACATAAATGAAGCAGAATCGACATTGATTCGTGACACAGCCGAAGCGACAGAGAAAAGACCAATGGTTGATTATGAACCTGTCCTTCCAGAGGATGAATTAACAGAATCTGATGGAGAATCTTGTCCTGCTACACACAGATCAGAAGAGCAAGCCAAGCAACGAACAGACGAGGAAGAAAGCTCATTAATACAGATCCTCGATTCATGGTATAGCAGCGAAGAAGACAGTAGGAAAGACAAGTCGGAAAATAGCGATGAGAGGATCGATTGTTCTGAAAATAGTTCGAAGCTTTCTAGTTTAGCTGCCAAAAGTGAAGCAACTACAGAGAGCTTTGCTAGAAAGCAAAGACATCAAAAGAGCTATTCTTTTGTTTCAGACACGGATGAAAAGGACGATGTAGAGCTGATTGATGGGATTTTTGGCACGTTAAAGAAATCGAACGAGTCACGGATCCATAATTGA 3012 42.99 MMRRFSSATFSLSSLYSSSSSSSLPFPPRVLLLSLSQFSTSSSSLRRHDEESRNVRVSVWWDFENCNIPAAVNVFKVAHLITAAVRANGIKGPVQITAFGDILQLSRANQEALSSTGISLTHIPKGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASPDTAPGVLCSAASIMWHWNTLIRGENLVGRHFNRPPDGPYGSWYGHYKVPLEDPYPVNEQPSSLRAEVSELSSDPKPRPIPKTVIRQLHNILKLHPKGILITELRSELGKSMDKDFYGYKKFYRFLLSVPHILKLQTNGDGQCIVCPVTPRPIEPLECSRGTSSDGNGGQDPNMRANLNNNDSSTESISESVLPSSERSAEDRQLKVKPSSEFGMSIGEGMEGESSRFPVSEPHAIEDSKQTSQFEAESSKNPSIGQLSESEMGFFRRIWRRLLSNNNYISENGSHNISEKCSTSDDTSKHKSCSGLLGMAKTVKPMSQDANCVHAVSNSPDHESAKLQKTAVVASEYDVKSSSNPGLLGSIRNWFKFWGKNTENGEVSERSCERNQLKNQSENHHLFSSNSFWQDIQSFMETPKGVQIISRSKTRSEIAENLLEGGPPVLKSLSISDLFDFLELLISDKKWVVECPSEANPFKLTLSVARKSSCTKQLHHANGLASIFMNKVSQCSLQGSAEHDSDSDKKNENIPQAGYYTTMTRRKFPERTRSEILGDCRKLVDEILRDHPEGYKMGAFRKLFLEKYGYHLNLQKLGYHKLASLLQIMPGVAVASTLIVPTSKAPKVSKLETALLSDPEKKTSHVVVTSGNDSSVLPRKDDDFESSWGELGPACTDWSNINEAESTLIRDTAEATEKRPMVDYEPVLPEDELTESDGESCPATHRSEEQAKQRTDEEESSLIQILDSWYSSEEDSRKDKSENSDERIDCSENSSKLSSLAAKSEATTESFARKQRHQKSYSFVSDTDEKDDVELIDGIFGTLKKSNESRIHN 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1293251 1298411 - Cp4.1LG16g00680.1 Cpe16g00066 482441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 943 958 - -
Cpe16g00066 1003 Gene3D - 260 327 IPR041966 -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 921 942 - -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 811 831 - -
Cpe16g00066 1003 CDD LOTUS 260 325 - -
Cpe16g00066 1003 Gene3D - 721 787 IPR041966 -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 860 876 - -
Cpe16g00066 1003 CDD PIN_limkain_b1_N_like 56 180 - -
Cpe16g00066 1003 Gene3D - 48 198 - -
Cpe16g00066 1003 ProSiteProfiles OST-type HTH domain profile. 259 328 IPR025605 -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 959 978 - -
Cpe16g00066 1003 Pfam OST-HTH/LOTUS domain 731 783 IPR025605 -
Cpe16g00066 1003 Pfam OST-HTH/LOTUS domain 262 324 IPR025605 -
Cpe16g00066 1003 Pfam NYN domain 56 191 IPR021139 GO:0004540
Cpe16g00066 1003 PANTHER EMB|CAB71880.1 16 943 - -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 860 978 - -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 336 436 - -
Cpe16g00066 1003 ProSiteProfiles OST-type HTH domain profile. 726 802 IPR025605 -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 415 436 - -
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 339 374 - -
Cpe16g00066 1003 CDD LOTUS 727 782 - -
Cpe16g00066 1003 PANTHER LIMKAIN B LKAP 16 943 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cpe16g00066 1003 MobiDBLite consensus disorder prediction 888 911 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00066 - - - cpep:111796232 1361.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00454 Cpe-Chr13:4842711 Cpe16g00066 Cpe-Chr16:1293251 1.42E-39 dispersed
Cpe14g00298 Cpe-Chr14:1747585 Cpe16g00066 Cpe-Chr16:1293251 4.04E-29 dispersed
Cpe16g00066 Cpe-Chr16:1293251 Cpe05g01099 Cpe-Chr5:7330666 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00066 Cpe_Chr16 FPKM 23.30481 25.78879 41.540562 37.235165 28.530977 28.55098 27.630957 21.692091 21.039951 18.816538