Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00072 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGTGATAATGGAACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTACGTGTTGCACCAGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTACGTTGCCATTCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGGACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCGGGTCGTGATCTAACTGATGCTTTAATGAAGATTCTCACCGAGAGAGGGTACATGTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCTTATGTTGCACTTGACTATGAGCAGGAACTCGAGACTGCCAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACTATTGGAGCTGAGAGATTCCGATGCCCTGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAAACTACTTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCCGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAG 1134 47.27 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1494604 1498141 + Cp4.1LG16g00720.1 Cpe16g00072 482447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00072 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cpe16g00072 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cpe16g00072 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cpe16g00072 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe16g00072 377 Gene3D - 10 371 - -
Cpe16g00072 377 PRINTS Actin signature 28 37 IPR004000 -
Cpe16g00072 377 PRINTS Actin signature 51 62 IPR004000 -
Cpe16g00072 377 PRINTS Actin signature 63 85 IPR004000 -
Cpe16g00072 377 PRINTS Actin signature 117 130 IPR004000 -
Cpe16g00072 377 PRINTS Actin signature 142 161 IPR004000 -
Cpe16g00072 377 PRINTS Actin signature 238 254 IPR004000 -
Cpe16g00072 377 Gene3D - 140 340 - -
Cpe16g00072 377 PANTHER ACTIN 1 376 IPR004000 -
Cpe16g00072 377 SMART actin_3 7 377 IPR004000 -
Cpe16g00072 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cpe16g00072 377 PANTHER ACTIN 1 376 - -
Cpe16g00072 377 Pfam Actin 5 377 IPR004000 -
Cpe16g00072 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cpe16g00072 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe16g00072 Cpe19g00544 CCT
Cpe10g00351 Cpe16g00072 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00351 Cpe-Chr10:2078847 Cpe16g00072 Cpe-Chr16:1494604 0 dispersed
Cpe16g00072 Cpe-Chr16:1494604 Cpe03g00368 Cpe-Chr3:1975582 0 dispersed
Cpe05g01072 Cpe-Chr5:7096182 Cpe16g00072 Cpe-Chr16:1494604 1.88E-142 transposed
Cpe16g00072 Cpe-Chr16:1494604 Cpe19g00544 Cpe-Chr19:4606352 0 wgd
Cpe16g00072 Cpe-Chr16:1494604 Cpe05g01071 Cpe-Chr5:7093739 2.07E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00072 K10355 - csv:101215469 758.059