Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00078 ATGACTCCGGCTTTCTCCTCCTCCTCCGCCACCGCCGCCTCCTCCCAGCGCCTTATCCGCTGCAGCGCCTCGCTCCGTCGGACACACGCTCCGCACCGACCTTCATCCACATCCCCTCCGCCGAGGAAGCTGAAGCCAATGGCGGAGGTAATGGCCAAGGCCAAGCATGTGGTTCTCGAACGGGACGATTACGATGACGTCAGGTGCGAGGAATGTGGCTCCGGCGACCGGGATGATGAGCTGCTGTTGTGCGACAAATGCGACAAGGGGTTTCATATGAAATGTGTTAGTCCGATCGTCGTTAGGGTCCCGATTGGATCCTGGCTTTGCCCCAAATGCTGTGGCCAAAGAAGAGTAAGAAGCTTTTCTCAGAAGAAGATTATCGATTTTTTCAGAATTCAGAAATGTAATGACGAAGAAGCCCCATATCTGTCTGCTCAAGCTATAAAGCGTAGGAGACGATTACGGCCATTGGTGTGGCAGAAGAAAAGGAGAAGATTACTACCATTTCGTCCAAGTGAAGATCCTGATCGCAGATTGAAACAGATGGGTTCACTTGCTACTGCTTTAACAACATTGAAAATGGAGTTTAGTGATGGTTTGACTTACGTGCCGGGCATGGCATCAAGATCTGCTAACCAGGCAGAGTTTGAAGATGGTGGAATGCAGGTTCTTTCCAAAGAGGATACTGAGACCTTGGAACTCTGCAGAGCCATGAGCAGAAGAGGCGAATGCCCTCCCCTTTTGGTTGTTTTTGATTCATGTGAAGGTTTTACGGTAGAAGCGGATGATCAAATTAAGGATATGACGTTTATTGCCGAATATACTGGTGATGTGGATTATCTTAAAAACCGTGAACACGATGATTGTGATAGTATGATGACCCTTCTTTCAGCAAAAGATCCATCTAGGAGTCTTGTCATCTGCCCCGACAGACGTGGAAACATCGCTCGGTTTATTAATGGAATAAATAATCATTCTCCAGAAGGTAAGAAGAAACAGAACTGTAAATGTGTGAGATACAATATTAACGGCGAATGCCGGGTCATTTTGGTTGCTATTCAGGATATTGCTAAAGGGGAGAGGCTTTATTATGACTACAATGGATATGAGTATGATTACCCTACTCATCATTTCGTTTGA 1143 46.72 MTPAFSSSSATAASSQRLIRCSASLRRTHAPHRPSSTSPPPRKLKPMAEVMAKAKHVVLERDDYDDVRCEECGSGDRDDELLLCDKCDKGFHMKCVSPIVVRVPIGSWLCPKCCGQRRVRSFSQKKIIDFFRIQKCNDEEAPYLSAQAIKRRRRLRPLVWQKKRRRLLPFRPSEDPDRRLKQMGSLATALTTLKMEFSDGLTYVPGMASRSANQAEFEDGGMQVLSKEDTETLELCRAMSRRGECPPLLVVFDSCEGFTVEADDQIKDMTFIAEYTGDVDYLKNREHDDCDSMMTLLSAKDPSRSLVICPDRRGNIARFINGINNHSPEGKKKQNCKCVRYNINGECRVILVAIQDIAKGERLYYDYNGYEYDYPTHHFV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1571677 1575523 + Cp4.1LG16g00780.1 Cpe16g00078 482453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00078 380 ProSiteProfiles SET domain profile. 246 368 IPR001214 GO:0005515
Cpe16g00078 380 SUPERFAMILY SET domain 240 369 IPR046341 -
Cpe16g00078 380 SUPERFAMILY FYVE/PHD zinc finger 35 114 IPR011011 -
Cpe16g00078 380 MobiDBLite consensus disorder prediction 25 44 - -
Cpe16g00078 380 Pfam PHD-finger 68 114 IPR019787 -
Cpe16g00078 380 Gene3D SET domain 152 380 IPR046341 -
Cpe16g00078 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 128 IPR013083 -
Cpe16g00078 380 ProSiteProfiles Zinc finger PHD-type profile. 66 116 IPR019787 -
Cpe16g00078 380 Pfam SET domain 286 368 IPR001214 GO:0005515
Cpe16g00078 380 SMART set_7 246 374 IPR001214 GO:0005515
Cpe16g00078 380 CDD SET_ATXR5_6-like 243 380 - -
Cpe16g00078 380 SMART PHD_3 68 114 IPR001965 -
Cpe16g00078 380 ProSitePatterns Zinc finger PHD-type signature. 69 113 IPR019786 -
Cpe16g00078 380 PANTHER HISTONE ACETYLTRANSFERASE 12 378 - -
Cpe16g00078 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 12 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00078 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101221402 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01065 Cpe16g00078 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00589 Cpe-Chr5:3564840 Cpe16g00078 Cpe-Chr16:1571677 8.97E-156 dispersed
Cpe13g00321 Cpe-Chr13:2798011 Cpe16g00078 Cpe-Chr16:1571677 1.06E-156 dispersed
Cpe16g00078 Cpe-Chr16:1571677 Cpe13g00159 Cpe-Chr13:1169524 3.81E-10 dispersed
Cpe14g00740 Cpe-Chr14:5568448 Cpe16g00078 Cpe-Chr16:1571677 9.43E-07 transposed
Cpe16g00078 Cpe-Chr16:1571677 Cpe05g01065 Cpe-Chr5:7047728 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50673 PF00856 SET 3.50E-07 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00078 Cpe_Chr16 FPKM 6.70948 6.565608 2.269797 2.817837 8.665648 6.071621 7.742598 0.316558 0.061689 0.19876