Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00079 ATGCCCAATCCTCTCCCCAGAACAACTCCATTTCCGTTTCCGTTTCAATTCGCCACCGCCAAATCCACTTTCCTCTTCCTCTCCATGGCCGCCCTTTCCTTCCTCTCCTTCCTCTCCCTCTTCTTCTTCCTCTCCCTCTCCTCCGCCGTCCACCACCACCACCACCACCACTCATTCCATTTCACCAACTCTCCATCCTCCGAGGAAACCCTCCGTGCCTGCAAGGCCACACGTTTCCCCGACCAATGCGGATCTTCCCTTTCTCATTCCCCTTCTCTTCCTCCCAATCCCACCACTCTCCAGATCATTCAATCCGCCATCGCCGTCTCCTCTGATGGTCTAGCCTCCGCGAAGTCCATGGTCAAGCAGATTCTCGATTCCTCTACCGATAGTCCGAATCGAACCACCGCTGCTAAGAATTGCCTCGAGGTTCTGCGATTTTCCGAGTATCGAATTTCTCTTACCAACGATGCTGTTCGGCGAGGTCGAACCAAGGACGCGCGCGCTTGGATGAGCGCGTCTCTTCTCTATCATTACGATTGCTGGTCCGCGCTTAAGTACGCCAACGATACCCAATCTGTTAACAAAACCATGGCGTTTCTTGACTCTCTCATTGGCCTTACCAGTAACGCCCTTAGTATGTTGGCGGCTTACGACATTTCTGGTAACGATACGGCGGCGTGGACGCTGCCGAGGACTGAGCGCGATGGATTCTGGGAAGGTAGTAGCGGCGGATCTGGGTTAGGGTTTAGCGGCGGGTTCCCATCGAAGGTAGATGCTAGCGCGACGGTGTGCAAAGACGGTGCAGGGGGATGTTATAAAACTGTTCAGGAAGCTGTGAATGCGGCGCCGGATAATGCGATGGGGAAGCGATTTGTGATTCATATTAAGGAAGGTGTTTATGATGAAATCGTGAGGGTTCCGTTGGAGAAGAAGAATGTGGTGTTCTTGGGAGATGGGATGGGGAAAACGGTGATCACGGGGTCTTTGAATGTCGGCCAGCCTGGGATTTCCACTTACAACACTGCCACCGTCGGAGTTGTTGGTGATGGATTCATGGCCAGTGGTCTGACCATTCAAAACACAGCAGGCCCTGATGCCCATCAGGCTGTGGCGTTTAGATCAGACAGTGATCTCTCAGTGATTCAAGACTGTGAGTTTCTAGGCAACCAAGACACTCTCTATGCTCATTCCCTCCGCCAATTCTACAAATCCTGCAAGATTCAAGGCAACGTAGATTTCATCTTTGGAAACTCAGCTTCCGTCTTCCAGGACTGCGAGATCCTTGTCCGTCCTCGACAGCTCAAGCCCGAGAAAGGCGAGAACAACGCCGTCACTGCTCACGGCAGGACAGACCCAGCTCAAACAACTGGTTTTGTGTTCCAGAATTGTCTCATAAATGGTACTCAGGAGTACATGGCATTGTACTACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCATGGAAGGAATACTCGAGGACGGTTTTCATACATTGTAATCTCGAGGCTCTTGTTTCTCCGGCAGGGTGGATGCCGTGGACTGGGGACTTTGCTTTGAAAACTCTTTACTATGGGGAGTTTGAGAACTCCGGGACGGGGTCCAAAACCTCGGAACGAGTCGAGTGGAGTAGTAAGATACCAGCACAGCATGTTTATAGTTACTCTATTCAAAATTTCATTCAGGGAGACGAATGGATTCCTTCATCGCAGTCTTCTGAAGAATCAAAAACGATAAATTAG 1749 51.06 MPNPLPRTTPFPFPFQFATAKSTFLFLSMAALSFLSFLSLFFFLSLSSAVHHHHHHHSFHFTNSPSSEETLRACKATRFPDQCGSSLSHSPSLPPNPTTLQIIQSAIAVSSDGLASAKSMVKQILDSSTDSPNRTTAAKNCLEVLRFSEYRISLTNDAVRRGRTKDARAWMSASLLYHYDCWSALKYANDTQSVNKTMAFLDSLIGLTSNALSMLAAYDISGNDTAAWTLPRTERDGFWEGSSGGSGLGFSGGFPSKVDASATVCKDGAGGCYKTVQEAVNAAPDNAMGKRFVIHIKEGVYDEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASVFQDCEILVRPRQLKPEKGENNAVTAHGRTDPAQTTGFVFQNCLINGTQEYMALYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPAGWMPWTGDFALKTLYYGEFENSGTGSKTSERVEWSSKIPAQHVYSYSIQNFIQGDEWIPSSQSSEESKTIN 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1588437 1591477 - Cp4.1LG16g00820.1 Cpe16g00079 482454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00079 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 215 IPR035513 -
Cpe16g00079 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 217 IPR035513 -
Cpe16g00079 582 PANTHER PECTINESTERASE 23 572 - -
Cpe16g00079 582 PANTHER PECTINESTERASE 23 572 - -
Cpe16g00079 582 CDD PMEI-like_3 73 219 - -
Cpe16g00079 582 Pfam Pectinesterase 262 566 IPR000070 GO:0030599|GO:0042545
Cpe16g00079 582 SMART PMEI_2 65 214 IPR006501 GO:0004857
Cpe16g00079 582 SUPERFAMILY Pectin lyase-like 260 571 IPR011050 -
Cpe16g00079 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 215 IPR006501 GO:0004857
Cpe16g00079 582 Pfam Plant invertase/pectin methylesterase inhibitor 73 214 IPR006501 GO:0004857
Cpe16g00079 582 Gene3D - 255 578 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00042 Cpe-Chr14:223595 Cpe16g00079 Cpe-Chr16:1588437 3.78E-73 dispersed
Cpe16g00079 Cpe-Chr16:1588437 Cpe18g00395 Cpe-Chr18:5184289 1.19E-54 dispersed
Cpe16g00079 Cpe-Chr16:1588437 Cpe05g00601 Cpe-Chr5:3652067 1.59E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00079 - - csv:101221165 917.531