Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00096 ATGCTGCTACCTGACCCTGCCGCTGGCCATGGCGGCTCTGTGGTCGTCGTCGGGGTCAGAATGGAACTACAGAGTCGGGAATTGCTCACTTGGGCGCTTGTTAAGGTTGCTCAGCCTGGCGATTGTGTCATTGCTCTTCATGTTCTTGATTCTGCCGCTGTTGATGAGGGGAAGTTGACTTTGCTCTCTCTTGTGAAGTCGTTTGACTCTATGTTGTCCGCTTATGAAGGATTCTGCAACCTGAAGCAGATTGATTTGAAGCTCAAAGTCTGCCGAGGATCGCCGGTCCGGAAAATCATTAGACGGGAAGTGGATTCGTACGGTGAGGCTTCTCTAATTCTCGGTACTTCCAAATCTCACCATAGAATCCGTTCGTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGCCGAGCAGATTCAGTGTTTTAGCAGTTAATGGTGGCAAAGTCATTTTCCAGAGATTAGCGACTTTCTCAACTAAATGCCAGTCTCGAGACAAGGATAGGGACAAGAATTGTGCTGCCATTGTAGATGTAGCTAATGAAGCAAAAGCTGTTGGGTTGGCTACAAACTTTATCGACACTCATATTTGTTTACAGAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTCCGTTGAGGGCACTCCATCTTCGCTTGAACGGAATGATTCCGGGACTGATTTGGTTGATGAGTTACCTGAGGACAATGCTGTGGGGAATTCACTAGCTTTAGTACCATTTCATAAGCCTCAGGGATCGTTGAAGTCGAATTCCATTGTGAGCCCAGAATCATCACATTGGAAATCGAGTTGGCCGCTTCTACGACGTAGATTTTTGTCCAAGCAGCATGTAGAGAAATCTTCAAAGAAGTTTTCTATGTTCCAAGGCGTATTGCACGTTCCAAACATCCAGTCGTCGTCGTCGTCCTCAGCCTTGGTTTATCCAGATCAGAAGCAGAACAGTTCTTATCAGGATCAGGGTTCCACCATTGATAGGGAGTGTGGTGCAATTGTGCCATATGGGTCCGGCTACATTTTCGGAAGCCTTCCTAAAGAGGTATTGGATTTGAAGGATAAGTACTCATCCATCTGCAGATTGTTTACTTATGAGGAACTTTTGTCAGCAACGTCTAATTTTATGCCTGAGAATATGGTTGGTAAAGGAGGTAGTAGCTATGTTTACCGAGGGCTTCTTCCTGATGGCAAGGAAATTGCTGTTAAAGTTCTGAAGCCATCTGAGAATGTTCTTAAGGAATTTGTTCAGGAAGTTGGGATCATTGCGACTTCAACTCATAAGAATGTTATATCTTTAATGGGTTTTTGTTTGGAGGACAATAATTTACTGTTGGTCTATGGTTTTCTTTCAAGAGGAAGTTTGGAAGAGAATCTTCACGATCCAAGCCTAGGCAGCGACTACAATGACGATCAAATAGGTCGAATGATTTTGGCTGCTACTCTTTCACCGAGACTCCGTCCTCAAATCAGCCTGGTGTTGAAACTTCTCCAAGGGGATGAGGAAATAACAACATGGGCAAGACAACAAATCGATGAATACGACGAATTCGACGCGAGTGATGGCGAACCTCTACCTACTAACATTCAATCACACCTTAACCTAGCCTTGCTTGGCTTGGAAGATGACTCACTTTCTCTTGGCAGTGGAATTCAAACCATCTCCATAGAGGACTACTTGCAGGGCAGATGCAGCAGCCGCTCTTCAAGCTTTAACTGA 1743 45.04 MLLPDPAAGHGGSVVVVGVRMELQSRELLTWALVKVAQPGDCVIALHVLDSAAVDEGKLTLLSLVKSFDSMLSAYEGFCNLKQIDLKLKVCRGSPVRKIIRREVDSYGEASLILGTSKSHHRIRSSASVAKYCARKLPSRFSVLAVNGGKVIFQRLATFSTKCQSRDKDRDKNCAAIVDVANEAKAVGLATNFIDTHICLQKSDSGCNDKTERDSVEGTPSSLERNDSGTDLVDELPEDNAVGNSLALVPFHKPQGSLKSNSIVSPESSHWKSSWPLLRRRFLSKQHVEKSSKKFSMFQGVLHVPNIQSSSSSSALVYPDQKQNSSYQDQGSTIDRECGAIVPYGSGYIFGSLPKEVLDLKDKYSSICRLFTYEELLSATSNFMPENMVGKGGSSYVYRGLLPDGKEIAVKVLKPSENVLKEFVQEVGIIATSTHKNVISLMGFCLEDNNLLLVYGFLSRGSLEENLHDPSLGSDYNDDQIGRMILAATLSPRLRPQISLVLKLLQGDEEITTWARQQIDEYDEFDASDGEPLPTNIQSHLNLALLGLEDDSLSLGSGIQTISIEDYLQGRCSSRSSSFN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1789855 1793745 - Cp4.1LG16g00980.1 Cpe16g00096 482471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00096 580 MobiDBLite consensus disorder prediction 206 230 - -
Cpe16g00096 580 Pfam Universal stress protein family 15 139 IPR006016 -
Cpe16g00096 580 MobiDBLite consensus disorder prediction 206 220 - -
Cpe16g00096 580 Pfam Protein tyrosine and serine/threonine kinase 387 470 IPR001245 GO:0004672|GO:0006468
Cpe16g00096 580 CDD USP_Like 24 146 - -
Cpe16g00096 580 Gene3D - 15 197 - -
Cpe16g00096 580 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Cpe16g00096 580 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 467 573 - -
Cpe16g00096 580 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 147 - -
Cpe16g00096 580 ProSiteProfiles Protein kinase domain profile. 383 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00096 580 SUPERFAMILY Protein kinase-like (PK-like) 365 477 IPR011009 -
Cpe16g00096 580 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 468 - -
Cpe16g00096 580 PANTHER OS01G0253100 PROTEIN 9 468 IPR045271 GO:0004714|GO:0006468
Cpe16g00096 580 PANTHER OS01G0253100 PROTEIN 467 573 IPR045271 GO:0004714|GO:0006468
Cpe16g00096 580 Gene3D Phosphorylase Kinase; domain 1 355 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00096 - - - cpep:111777115 905.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01044 Cpe16g00096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00644 Cpe-Chr13:6153030 Cpe16g00096 Cpe-Chr16:1789855 5.94E-29 dispersed
Cpe16g00096 Cpe-Chr16:1789855 Cpe05g01372 Cpe-Chr5:9644701 4.96E-28 dispersed
Cpe16g00096 Cpe-Chr16:1789855 Cpe05g01044 Cpe-Chr5:6907209 1.80E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62879 PF07714 PK_Tyr_Ser-Thr 1.00E-10 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00096 Cpe_Chr16 FPKM 33.028515 34.655418 0.0 0.0 1.437774 1.72914 1.242158 0.0 0.0 0.0