Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00136 ATGGGGGTATCATTACTCAAAGTACTCCTCAGACATATTTCATCATTTCTTCAACTTTCATCTACTGACTTCATAAATTTACAACCTACTCTGAAGTACTTCCACAAAATAGAAGGGATCTTCAAACTATTGAGACCAATACTAGATGCAGTTGTTGATTCAGATATAGCTTCCGATGAAGAGCTTACTAAGGCGTTTGAAGAACTCGATCATTCAATTGATGAACTAAGGGCGCTCTTCGAAAATTGGCAACCGTTGTCGAGTAAAGTATACTTTGTATTGCAAAGTGAAGCATTGATATCAAAGATTGGGAAATCTTGCTTAGATATATTCCAGCTTTTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCATCATCTCTTGAGCACTGCGTCCAAAAAATTAAGCATTTTGGAAAGGAAGAAATATCTTCCGTTATTAAAGATGCCATAGGGAATGAAGTAGAGGGCATTGCACCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTTTCTGAGCTTGAGATCAAATCAGGAGATCTTAATTGAGGCTGTAGCACTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCTGAGGGCATTGATCAAATGATTGCTCTTGTAACCCATATGCATGAACGGTTTATTATGATAAATCAATCCCAAAATTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTGATGACAGATCCAGTTATTGTAGCATCGGGGCAGACGTACGAGAGGGTATTTATTAAAAATTGGATCGATCTGGGGCTCAATGTTTGCCCGAAGACTAGACAGACGTTGGTTCACACGAATCTTATACCAAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTAAAATTGTCTGATCCCTCGAGGTCGGTGAACTTAAACCAGCTTTCGCCTGTTCTCGCTGGGAACTTTGAGTCTGATACCCATCGAGAGCCCATTTTTCCTCATTCCCCTGGTTACCAACCGATGTCCCCGCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACATGAACTCGCTTGGGGTAAGCTATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTATCAAATGATGCTGGTGATGAACGTGAGATTGATGTTAGTAGACTGTTGCTATCAAGCTCGGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTACGATTTGGTCGCTAAACCGTCTACGTCACCATCTAAAGCCAATGTTCCAGATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACCGCCTCCACCTCTAGTGCAGTCTCGAATACTAATCTCTCTCAAGGAACTTCAGGGGAACCCAATGAATCTGTCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTACCTCGACTACCAACCACAGAGAACCAGATCGGGAGCATCCACCGAGACTAGCTGACCCAAGATCTCAAGGTAATACAATGTGGCTCCGACCATCAGAGAGGTTTGCTTCTAAGATGATTGCACCATCTGCTAATGAGACGAGGCCTGATCTTTCTGCTATTGAAGCACAAGTTCAGAAAGTGGTAGAGGAATTAAAGAGCAGTTCACTTGAAACTTTAAGAGGAGCTACGGCTGAACTGCGGCTACTGGCCAGACATAACATGGATAATCGAATAGTGATCGCTCAATCCGGGGCCATCGAATATTTGGTTGATTTGCTCCTGTCTGCAGACTCGAAGCTACAGGAGAATGCTGTGACAGCTCTTCTAAACTTATCGATCAATGATAATAACAAAAATGTCATTGCCCAGGCTAATGCAATTGAACCATTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTAGTTGAATTACTGGGTAATGGAACTCCCAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCGATATTCCACGAGAACAAGGCTAGAATCGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGCTGATGGACCCAGCTGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTCACCACGATTCCCGAGGGTCGGTCTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTTGTCGAGGTCGTCGAGTTGGGTTCTGGGAGAGGAAAGGAAAATGCAGCAGCAGCATTATTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCTCAAGCGCTTCTTAGCCATTTCAGAAGCCAGAGACATGGGAATTCGGGAAGAGGGTAA 2490 44.02 MGVSLLKVLLRHISSFLQLSSTDFINLQPTLKYFHKIEGIFKLLRPILDAVVDSDIASDEELTKAFEELDHSIDELRALFENWQPLSSKVYFVLQSEALISKIGKSCLDIFQLFQSSNENLPEELSSSSLEHCVQKIKHFGKEEISSVIKDAIGNEVEGIAPSSDVLVKLADFLSLRSNQEILIEAVALEKLKESAEQAENTEEAEGIDQMIALVTHMHERFIMINQSQNSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVNLNQLSPVLAGNFESDTHREPIFPHSPGYQPMSPQSTRSAGSGKNMNSLGVSYRDGSSSLLSHSFSEDSLSNDAGDEREIDVSRLLLSSSEDQMAKLEENGYDLVAKPSTSPSKANVPDTSGEDEPSHSHNRTASTSSAVSNTNLSQGTSGEPNESVSDAAGESKSEPLAATSTTNHREPDREHPPRLADPRSQGNTMWLRPSERFASKMIAPSANETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLARHNMDNRIVIAQSGAIEYLVDLLLSADSKLQENAVTALLNLSINDNNKNVIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLTTIPEGRSAIGQEGGIPVLVEVVELGSGRGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3117721 3121230 - Cp4.1LG16g01370.1 Cpe16g00136 482511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00136 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 709 750 IPR000225 GO:0005515
Cpe16g00136 829 MobiDBLite consensus disorder prediction 448 492 - -
Cpe16g00136 829 MobiDBLite consensus disorder prediction 423 437 - -
Cpe16g00136 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 710 IPR000225 GO:0005515
Cpe16g00136 829 Pfam Armadillo/beta-catenin-like repeat 616 655 IPR000225 GO:0005515
Cpe16g00136 829 Pfam Armadillo/beta-catenin-like repeat 577 614 IPR000225 GO:0005515
Cpe16g00136 829 Pfam Armadillo/beta-catenin-like repeat 659 696 IPR000225 GO:0005515
Cpe16g00136 829 MobiDBLite consensus disorder prediction 333 368 - -
Cpe16g00136 829 Gene3D - 526 825 IPR011989 -
Cpe16g00136 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 825 - -
Cpe16g00136 829 MobiDBLite consensus disorder prediction 374 393 - -
Cpe16g00136 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515
Cpe16g00136 829 SUPERFAMILY ARM repeat 546 818 IPR016024 -
Cpe16g00136 829 Coils Coil 179 209 - -
Cpe16g00136 829 SMART arm_5 657 697 IPR000225 GO:0005515
Cpe16g00136 829 SMART arm_5 616 656 IPR000225 GO:0005515
Cpe16g00136 829 SMART arm_5 698 737 IPR000225 GO:0005515
Cpe16g00136 829 SMART arm_5 738 778 IPR000225 GO:0005515
Cpe16g00136 829 SMART arm_5 575 615 IPR000225 GO:0005515
Cpe16g00136 829 SMART arm_5 780 820 IPR000225 GO:0005515
Cpe16g00136 829 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Cpe16g00136 829 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Cpe16g00136 829 MobiDBLite consensus disorder prediction 418 514 - -
Cpe16g00136 829 PANTHER U BOX DOMAIN-CONTAINING 8 825 - -
Cpe16g00136 829 Coils Coil 397 417 - -
Cpe16g00136 829 SUPERFAMILY RING/U-box 224 312 - -
Cpe16g00136 829 CDD RING-Ubox_PUB 240 282 IPR045210 -
Cpe16g00136 829 MobiDBLite consensus disorder prediction 346 368 - -
Cpe16g00136 829 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Cpe16g00136 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01172 Cpe16g00136 CCT
Cpe16g00136 Cpe19g00648 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01147 Cpe-Chr12:9426757 Cpe16g00136 Cpe-Chr16:3117721 1.43E-63 dispersed
Cpe15g00149 Cpe-Chr15:1235181 Cpe16g00136 Cpe-Chr16:3117721 6.37E-10 dispersed
Cpe16g00136 Cpe-Chr16:3117721 Cpe17g00897 Cpe-Chr17:6964531 1.15E-62 dispersed
Cpe20g00631 Cpe-Chr20:3948834 Cpe16g00136 Cpe-Chr16:3117721 7.02E-08 dispersed
Cpe16g00136 Cpe-Chr16:3117721 Cpe19g00648 Cpe-Chr19:5228574 1.30E-137 wgd
Cpe16g00136 Cpe-Chr16:3117721 Cpe05g01172 Cpe-Chr5:8001943 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00136 - - cmax:111483613 1512.66