Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00141 ATGCATCCCGATGATCAGCGGCGGCAGCCGTTGTTGGAGGAGGAAGATGAAGAAACTGCTTACAATTTAACGGAGAAGGTTGTGGTTGTTGGGATCGACGAAGCGGAGTCCGATTTGGATGTGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTTTTGATGAGTATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACAGCCATGGGGCTTTTGATCCAGTTGCTCTCGGCCAGGCTTGGTGTTGCCACTGGCAAGCACTTGGCCGAGCTTTGTAGAGAAGAGTACCCATCTTGGGCGAGAATTTTGCTGTGGGTCATGGCAGAGTTAGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGGGCTTTGCCGCTTTGGGCTGGAGTTATAATCACTGCTTTTGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAACTTGAGGCTGTGTTTGCTGTTCTTATTGCTACCATGGCACTCTCATTTGCTTGGATTTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCAGTAGCTGTTGTGGGGTGTATCATTATGCCTCATAACGTGTTTCTTCACTCCGCTCTCGTGCAGTCACGAGACGTCAATCCGAGCAAGAAAGGGCGGGTTCGAGAAGCTCTTAGATACTATTCCATTGAGTCCACTCTTGCTCTTTTTGTGTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACCGACATAGCTAGTAGCATTGGTCTTGTAAATGCAGGGCAATATCTTCAAGATAAATATGGTGGAGGGCTCTTCCCCATTTTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGGGTGGCTTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCGATTGTGCCAACTATGATTGTCGCTCTCGCGTTCGAAACTTCTGATTCGATGGTCGATGTTCTTAATGAATGGCTCAATGTCCTTCAGTCAATTCAGATACCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCCAAGGAACATCTAATGGGCAGTTTCAGAATTGGCCCCATTTTAAAGTTGTCCTCTTGGCTAGTGGCAGTCTTGGTGATGGCCATCAACGGGTATCTTTTGGTGAGCTTCTTCTCATCAGAAGTGAACGGAGTGCTTGTTGCCATTTTCGTGTTCGTCTTCATCGCTGCATATCTCTCCTTTGTCGTTTACCTCGTCTATCGAAGCATTTCATTTTCAAGTTGGCACAGCTTCATTAACCGGAAGACTTCCACGGACAGCGAAAACTGA 1533 45.79 MHPDDQRRQPLLEEEDEETAYNLTEKVVVVGIDEAESDLDVGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGKHLAELCREEYPSWARILLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITAFDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWIFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVNPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALAFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGSFRIGPILKLSSWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFVFIAAYLSFVVYLVYRSISFSSWHSFINRKTSTDSEN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3308876 3312467 - Cp4.1LG16g01410.1 Cpe16g00141 482516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00141 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe16g00141 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 508 - -
Cpe16g00141 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00222 Cpe-Chr10:1270136 Cpe16g00141 Cpe-Chr16:3308876 6.37E-24 dispersed
Cpe16g00141 Cpe-Chr16:3308876 Cpe19g00415 Cpe-Chr19:3675099 6.85E-21 dispersed
Cpe16g00141 Cpe-Chr16:3308876 Cpe05g01175 Cpe-Chr5:8034289 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00141 K21398 - csv:101211711 932.939