Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00153 ATGGCGGTGGAGCTTCTCTCAGCCTGCACAAACACCCAACTCTCCGCCTCTATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCACCGGCCTCCACACCCTCAAAAACCTCATCACATTACTCTCTCACTCTCATCCTTCAAATCTCGACTCCGATTGCCAAGCCGTCGCTAACTCCGCCGTCTCCCACTTCAAAAAGGCCATTTCTCTCCTCGGCCGCTCACCCAGAACTGGCCATGCTCGATTCCGTCGAGCCCCTTTGGATTCCTCTAAAATCTACAACGCCACACCCATTCAACAAATCCCTCCGCCCGTTGAGCGCCTCGAATCCGCCACCACCATCAATTTCTCGTACTCCTCTGCTCCAAATGGCTCGTTTTTGACCTCGATTCCTGGTGCCGACTCTGGAATTAGCCTCCAACACGAACCCTCTTCCTCTTCTTTTCAGATTACCGATCTTTCCAGAGCTTCTTCTGGTGTCAAGAGGAAGTGCGGGTCTGAGAATTTGGGCTCCGGGAAGTGCTCTGTATCCTCCGGTGGTCGTTGCCACTGCTCTAAGAAGAGAAAAATGAGGTTAAAAAGGGTGGTGAGAGTGCCAGCCATAAGCTCAAAGAACGCTGATATTCCTCCGGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGCTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCACGTTGAGAGAGCCTCAGATGATCCAACTATGTTAATAGTGACATACGAAGGCGACCATAATCACTCGCAATCTGTTGCAGAGGCCTCAAGTCTTATACTCGAATCCTGGTGA 849 50.65 MAVELLSACTNTQLSASMDQDSAVQEAATGLHTLKNLITLLSHSHPSNLDSDCQAVANSAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKIYNATPIQQIPPPVERLESATTINFSYSSAPNGSFLTSIPGADSGISLQHEPSSSSFQITDLSRASSGVKRKCGSENLGSGKCSVSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPTMLIVTYEGDHNHSQSVAEASSLILESW 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3563077 3565193 + Cp4.1LG16g01510.1 Cpe16g00153 482528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00153 282 Pfam Plant zinc cluster domain 161 207 IPR018872 -
Cpe16g00153 282 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00153 282 SUPERFAMILY WRKY DNA-binding domain 205 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe16g00153 282 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe16g00153 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 104 281 - -
Cpe16g00153 282 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 17 92 - -
Cpe16g00153 282 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00153 282 Pfam WRKY DNA -binding domain 211 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe16g00153 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 104 281 IPR044810 GO:0003700
Cpe16g00153 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 92 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01181 Cpe16g00153 CCT
Cpe10g00447 Cpe16g00153 CCT
Cpe05g01181 Cpe16g00153 ECH
Cpe10g00447 Cpe16g00153 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01181 Cpe-Chr5:8145093 Cpe16g00153 Cpe-Chr16:3563077 1.05E-175 dispersed
Cpe10g00447 Cpe-Chr10:2618206 Cpe16g00153 Cpe-Chr16:3563077 4.69E-110 dispersed
Cpe16g00153 Cpe-Chr16:3563077 Cpe17g00877 Cpe-Chr17:6822550 8.94E-55 dispersed
Cpe19g00635 Cpe-Chr19:5145825 Cpe16g00153 Cpe-Chr16:3563077 3.66E-08 dispersed
Cpe16g00152 Cpe-Chr16:3550772 Cpe16g00153 Cpe-Chr16:3563077 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50683 PF03106 WRKY 3.30E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00153 - - bhj:120089490 503.056