Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00215 ATGAAAACGGAATTTGACTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAGTGGGAGAGAGAGAGGGGGGGAAGTAGATCTGAAGGCTCATATAGCAGAGCCTCATACGGCGGAGATTCAGGGAGAGAAATCCGGCCAAGGGCGGCTGATTCTTTTCGAACGGGCGGATTCAAAAGGAAAATGCCGCGCCCTTATTTTCACAAGCTTGTGCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAGCTTTTGTCAGGATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGACGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTATTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAATCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGGAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAGTCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCAGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCGGGACTATGAATCCTCCTCCGCTGCGAAGGTCTGCTGAAATTTCCATGGAGAACTCTGTTACAGCCATAGTCGAGTCAGATGAACAGGAGGGAGCTCAATCGTTCAATGAAAGCTCTCCAGTAAAGAGGGCTGGCCTCTTCTACAAGCTGGTAGTGCCGTCCATTCTTCAAGACAAGAAGCTGAAAATACCAAATAAATTTGCAAAGAAGTTTGCAGATGATCTTTCTGATCTTGTTACTCTAGTTGTTCCGAATGGTCATCGATGGGTTCTGGAGTTAAAAAGACATGGCCGTAGTATGTGGTTTGAGGATGGTTGGCATGATTTTGTCAAACACCATTGCATTCAAGTTGGACAACTCTTGGTTTTCAGATTTGAAGGGAATTCCGTGTTCAACTTTTACATGTTCAACCTAACTGCTATTTCAAATGGTCCATGCAATACTTCAAATGCTTCCTCTGAACAAAACGATGGTGAACAATGTCCTGTTACACTTGGAAAAGAAGCTGAATACAAGAAATTAGTTGAGATATTTGGAACGAGTTCTCCAGATCCATCTCCACGCCCTTCGGTGAAAAACGCTTTGTGTGGTTTTTCAGATCAGCAGAAGTTCAATGGAAGTTGCAATGGGACTAGCATTAAGAACTTTATGCATTGGTTTGACACAGAGAACGTGCATCCTCTAAAGGATTTAGATAAGTTGCAACTACTAAAGTCGAATCAAGATATTGGTATTCAATTCGACGGGGACGAGCTTGCAAAAGCTAGAGAGAATTTTGACTTTGAATTCTCTGATGAAACAAATGAAAGAGCCAGGAAAAAGAAGTTGAAAGTTGAACCAATTGACTACTACAATGACAATGAGCCCATAGTGGAGGAAAATTGCGGAAACATCCCACATAAAATTAGTAGGATGGCGTGTGGAGTCGAGGAGTTCAAGCCTGGTAATCCCTTTTGCTGGATTGTTATGAGGCAATCCTATGTCCGAAGAGGGTTCCATCTGCATATACCGTCCAAATTTGCTGAGAAGTATCTAAAAGGGGTCTCAGGCGACATCACACTTCAGGTTTCTAGTGGGAAGCAATGGCGTGTTCGATGCATTCGTGAAGGTCCTGGCACCAAGCTAACCAGGGGATGGGCTGACTTTGTTGTGGAGAATGATTTGAAAGAAGAAGACGTTTGTGTCTTTGAGCTGATTGATATAAAAGCTACTGCACTGAAAGTTACAATATTCCGAGTCCACGACGATCCAACAAAAACTTGA 2577 42.84 MKTEFDCKKKKKKKKKNQWERERGGSRSEGSYSRASYGGDSGREIRPRAADSFRTGGFKRKMPRPYFHKLVLSSTIQARKLRIPEAFVRMIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRRSAEISMENSVTAIVESDEQEGAQSFNESSPVKRAGLFYKLVVPSILQDKKLKIPNKFAKKFADDLSDLVTLVVPNGHRWVLELKRHGRSMWFEDGWHDFVKHHCIQVGQLLVFRFEGNSVFNFYMFNLTAISNGPCNTSNASSEQNDGEQCPVTLGKEAEYKKLVEIFGTSSPDPSPRPSVKNALCGFSDQQKFNGSCNGTSIKNFMHWFDTENVHPLKDLDKLQLLKSNQDIGIQFDGDELAKARENFDFEFSDETNERARKKKLKVEPIDYYNDNEPIVEENCGNIPHKISRMACGVEEFKPGNPFCWIVMRQSYVRRGFHLHIPSKFAEKYLKGVSGDITLQVSSGKQWRVRCIREGPGTKLTRGWADFVVENDLKEEDVCVFELIDIKATALKVTIFRVHDDPTKT 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4296222 4307562 + Cp4.1LG16g02050.1 Cpe16g00215 482590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00215 858 SUPERFAMILY DNA-binding pseudobarrel domain 326 426 IPR015300 -
Cpe16g00215 858 MobiDBLite consensus disorder prediction 268 288 - -
Cpe16g00215 858 Gene3D - 59 160 IPR015300 -
Cpe16g00215 858 Gene3D - 480 577 IPR015300 -
Cpe16g00215 858 CDD B3_DNA 65 157 IPR003340 GO:0003677
Cpe16g00215 858 CDD B3_DNA 329 424 IPR003340 GO:0003677
Cpe16g00215 858 CDD B3_DNA 755 850 IPR003340 GO:0003677
Cpe16g00215 858 ProSiteProfiles B3 DNA-binding domain profile. 66 159 IPR003340 GO:0003677
Cpe16g00215 858 SUPERFAMILY DNA-binding pseudobarrel domain 750 851 IPR015300 -
Cpe16g00215 858 SUPERFAMILY DNA-binding pseudobarrel domain 484 575 IPR015300 -
Cpe16g00215 858 MobiDBLite consensus disorder prediction 1 18 - -
Cpe16g00215 858 ProSiteProfiles B3 DNA-binding domain profile. 331 426 IPR003340 GO:0003677
Cpe16g00215 858 ProSiteProfiles B3 DNA-binding domain profile. 757 852 IPR003340 GO:0003677
Cpe16g00215 858 MobiDBLite consensus disorder prediction 1 46 - -
Cpe16g00215 858 Pfam B3 DNA binding domain 760 850 IPR003340 GO:0003677
Cpe16g00215 858 Pfam B3 DNA binding domain 490 571 IPR003340 GO:0003677
Cpe16g00215 858 Pfam B3 DNA binding domain 68 156 IPR003340 GO:0003677
Cpe16g00215 858 Pfam B3 DNA binding domain 334 424 IPR003340 GO:0003677
Cpe16g00215 858 PANTHER B3 DOMAIN-CONTAINING 479 851 - -
Cpe16g00215 858 PANTHER B3 DOMAIN-CONTAINING 66 426 - -
Cpe16g00215 858 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 479 851 - -
Cpe16g00215 858 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 66 426 - -
Cpe16g00215 858 ProSiteProfiles B3 DNA-binding domain profile. 484 577 IPR003340 GO:0003677
Cpe16g00215 858 Gene3D - 739 854 IPR015300 -
Cpe16g00215 858 Gene3D - 308 428 IPR015300 -
Cpe16g00215 858 CDD B3_DNA 484 575 IPR003340 GO:0003677
Cpe16g00215 858 SUPERFAMILY DNA-binding pseudobarrel domain 63 159 IPR015300 -
Cpe16g00215 858 SMART B3_2 485 577 IPR003340 GO:0003677
Cpe16g00215 858 SMART B3_2 331 426 IPR003340 GO:0003677
Cpe16g00215 858 SMART B3_2 757 852 IPR003340 GO:0003677
Cpe16g00215 858 SMART B3_2 67 159 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00469 Cpe-Chr8:3011780 Cpe16g00215 Cpe-Chr16:4296222 3.90E-07 dispersed
Cpe16g00215 Cpe-Chr16:4296222 Cpe19g00595 Cpe-Chr19:4932815 2.34E-07 dispersed
Cpe16g00215 Cpe-Chr16:4296222 Cpe02g00152 Cpe-Chr2:782926 8.32E-08 wgd
Cpe16g00215 Cpe-Chr16:4296222 Cpe05g01232 Cpe-Chr5:8630927 6.84E-62 wgd
Cpe16g00215 Cpe-Chr16:4296222 Cpe07g00453 Cpe-Chr7:2899129 2.43E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50690 PF02362 B3 6.50E-20 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00215 - - qlo:115966833 771.541