Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00215 | ATGAAAACGGAATTTGACTGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAGTGGGAGAGAGAGAGGGGGGGAAGTAGATCTGAAGGCTCATATAGCAGAGCCTCATACGGCGGAGATTCAGGGAGAGAAATCCGGCCAAGGGCGGCTGATTCTTTTCGAACGGGCGGATTCAAAAGGAAAATGCCGCGCCCTTATTTTCACAAGCTTGTGCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCAGAAGCTTTTGTCAGGATGATCAGGGATGAGCTTTCTGGAGTTGCTACCCTTACTGTTCCCGACGGCCATGTTTGGCGTGTGGGTTTGAGGAAAGTCGATAACAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCCATACGGGTTGGGTACTTATTAGTATTCAGATACGAGGGAAACTCGGCGTTCTGTGTCTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCACTCGGTGGTAATCAAAGGAATAATTACAGCATTCAAAACAGAATCTTTGAAGAATTGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGGAATAAGCTATTTGGTGATGAATGGAATCCGCACCAATCAAAGTCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGTGATATTGGGGTTCAGTTTAGTGCTATGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGTACACAGAATTAAAAAGAGTGGAGGCAAAAAGCGAAAACTTGATTCTAGCGAGCACCATCCATCATCTGCTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCGTTCTGCAGGGTCGTCTTGCGACCATCGTATCTGTATAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCAGACGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATCGTGCTCAAAGTTACCATGTTTCGTGTCATGGAAGAAGGCGGACGAATGGCTAACCCGAATCCTACCGGGACTATGAATCCTCCTCCGCTGCGAAGGTCTGCTGAAATTTCCATGGAGAACTCTGTTACAGCCATAGTCGAGTCAGATGAACAGGAGGGAGCTCAATCGTTCAATGAAAGCTCTCCAGTAAAGAGGGCTGGCCTCTTCTACAAGCTGGTAGTGCCGTCCATTCTTCAAGACAAGAAGCTGAAAATACCAAATAAATTTGCAAAGAAGTTTGCAGATGATCTTTCTGATCTTGTTACTCTAGTTGTTCCGAATGGTCATCGATGGGTTCTGGAGTTAAAAAGACATGGCCGTAGTATGTGGTTTGAGGATGGTTGGCATGATTTTGTCAAACACCATTGCATTCAAGTTGGACAACTCTTGGTTTTCAGATTTGAAGGGAATTCCGTGTTCAACTTTTACATGTTCAACCTAACTGCTATTTCAAATGGTCCATGCAATACTTCAAATGCTTCCTCTGAACAAAACGATGGTGAACAATGTCCTGTTACACTTGGAAAAGAAGCTGAATACAAGAAATTAGTTGAGATATTTGGAACGAGTTCTCCAGATCCATCTCCACGCCCTTCGGTGAAAAACGCTTTGTGTGGTTTTTCAGATCAGCAGAAGTTCAATGGAAGTTGCAATGGGACTAGCATTAAGAACTTTATGCATTGGTTTGACACAGAGAACGTGCATCCTCTAAAGGATTTAGATAAGTTGCAACTACTAAAGTCGAATCAAGATATTGGTATTCAATTCGACGGGGACGAGCTTGCAAAAGCTAGAGAGAATTTTGACTTTGAATTCTCTGATGAAACAAATGAAAGAGCCAGGAAAAAGAAGTTGAAAGTTGAACCAATTGACTACTACAATGACAATGAGCCCATAGTGGAGGAAAATTGCGGAAACATCCCACATAAAATTAGTAGGATGGCGTGTGGAGTCGAGGAGTTCAAGCCTGGTAATCCCTTTTGCTGGATTGTTATGAGGCAATCCTATGTCCGAAGAGGGTTCCATCTGCATATACCGTCCAAATTTGCTGAGAAGTATCTAAAAGGGGTCTCAGGCGACATCACACTTCAGGTTTCTAGTGGGAAGCAATGGCGTGTTCGATGCATTCGTGAAGGTCCTGGCACCAAGCTAACCAGGGGATGGGCTGACTTTGTTGTGGAGAATGATTTGAAAGAAGAAGACGTTTGTGTCTTTGAGCTGATTGATATAAAAGCTACTGCACTGAAAGTTACAATATTCCGAGTCCACGACGATCCAACAAAAACTTGA | 2577 | 42.84 | MKTEFDCKKKKKKKKKNQWERERGGSRSEGSYSRASYGGDSGREIRPRAADSFRTGGFKRKMPRPYFHKLVLSSTIQARKLRIPEAFVRMIRDELSGVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEELEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNPHQSKSASTLQAEYLSTRDIGVQFSAMEVKKSADEVRFQNLGDDVHRIKKSGGKKRKLDSSEHHPSSAHSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVMEEGGRMANPNPTGTMNPPPLRRSAEISMENSVTAIVESDEQEGAQSFNESSPVKRAGLFYKLVVPSILQDKKLKIPNKFAKKFADDLSDLVTLVVPNGHRWVLELKRHGRSMWFEDGWHDFVKHHCIQVGQLLVFRFEGNSVFNFYMFNLTAISNGPCNTSNASSEQNDGEQCPVTLGKEAEYKKLVEIFGTSSPDPSPRPSVKNALCGFSDQQKFNGSCNGTSIKNFMHWFDTENVHPLKDLDKLQLLKSNQDIGIQFDGDELAKARENFDFEFSDETNERARKKKLKVEPIDYYNDNEPIVEENCGNIPHKISRMACGVEEFKPGNPFCWIVMRQSYVRRGFHLHIPSKFAEKYLKGVSGDITLQVSSGKQWRVRCIREGPGTKLTRGWADFVVENDLKEEDVCVFELIDIKATALKVTIFRVHDDPTKT | 858 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4296222 | 4307562 | + | Cp4.1LG16g02050.1 | Cpe16g00215 | 482590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00215 | 858 | SUPERFAMILY | DNA-binding pseudobarrel domain | 326 | 426 | IPR015300 | - | |
Cpe16g00215 | 858 | MobiDBLite | consensus disorder prediction | 268 | 288 | - | - | |
Cpe16g00215 | 858 | Gene3D | - | 59 | 160 | IPR015300 | - | |
Cpe16g00215 | 858 | Gene3D | - | 480 | 577 | IPR015300 | - | |
Cpe16g00215 | 858 | CDD | B3_DNA | 65 | 157 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | CDD | B3_DNA | 329 | 424 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | CDD | B3_DNA | 755 | 850 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | ProSiteProfiles | B3 DNA-binding domain profile. | 66 | 159 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | SUPERFAMILY | DNA-binding pseudobarrel domain | 750 | 851 | IPR015300 | - | |
Cpe16g00215 | 858 | SUPERFAMILY | DNA-binding pseudobarrel domain | 484 | 575 | IPR015300 | - | |
Cpe16g00215 | 858 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cpe16g00215 | 858 | ProSiteProfiles | B3 DNA-binding domain profile. | 331 | 426 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | ProSiteProfiles | B3 DNA-binding domain profile. | 757 | 852 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cpe16g00215 | 858 | Pfam | B3 DNA binding domain | 760 | 850 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | Pfam | B3 DNA binding domain | 490 | 571 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | Pfam | B3 DNA binding domain | 68 | 156 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | Pfam | B3 DNA binding domain | 334 | 424 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | PANTHER | B3 DOMAIN-CONTAINING | 479 | 851 | - | - | |
Cpe16g00215 | 858 | PANTHER | B3 DOMAIN-CONTAINING | 66 | 426 | - | - | |
Cpe16g00215 | 858 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 | 479 | 851 | - | - | |
Cpe16g00215 | 858 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 | 66 | 426 | - | - | |
Cpe16g00215 | 858 | ProSiteProfiles | B3 DNA-binding domain profile. | 484 | 577 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | Gene3D | - | 739 | 854 | IPR015300 | - | |
Cpe16g00215 | 858 | Gene3D | - | 308 | 428 | IPR015300 | - | |
Cpe16g00215 | 858 | CDD | B3_DNA | 484 | 575 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | SUPERFAMILY | DNA-binding pseudobarrel domain | 63 | 159 | IPR015300 | - | |
Cpe16g00215 | 858 | SMART | B3_2 | 485 | 577 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | SMART | B3_2 | 331 | 426 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | SMART | B3_2 | 757 | 852 | IPR003340 | GO:0003677 | |
Cpe16g00215 | 858 | SMART | B3_2 | 67 | 159 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00469 | Cpe-Chr8:3011780 | Cpe16g00215 | Cpe-Chr16:4296222 | 3.90E-07 | dispersed | |
Cpe16g00215 | Cpe-Chr16:4296222 | Cpe19g00595 | Cpe-Chr19:4932815 | 2.34E-07 | dispersed | |
Cpe16g00215 | Cpe-Chr16:4296222 | Cpe02g00152 | Cpe-Chr2:782926 | 8.32E-08 | wgd | |
Cpe16g00215 | Cpe-Chr16:4296222 | Cpe05g01232 | Cpe-Chr5:8630927 | 6.84E-62 | wgd | |
Cpe16g00215 | Cpe-Chr16:4296222 | Cpe07g00453 | Cpe-Chr7:2899129 | 2.43E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50690 | PF02362 | B3 | 6.50E-20 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00215 | - | - | qlo:115966833 | 771.541 |