Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00220 ATGTCGACCGCCCCTTCTCCTTCTCCATCTTCTTCTCCTTCTCCTTCCCCTTCCACCTCCTCCTCCTCCTACGCCGCCGCCGTCAATTTCCCTCCCCCCTCATCCTTACTGCCGGGAAAGCTCCCAGTCGACTTCAGCCCTCCTCTAATCGCAATGGTTGTCGTCATCGCTACGGCCTTTCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCACGTCATCCCTCCAATCCTCCTCCTCATACGCCGCCACCGCCGCCGGTGGCGGCGGTGGCGGCGGAGACGACGGCGCGCCCGATCTTACCTCCCGTCCTCCTCCGGCGGCGACTTGGATTCGCTCCCTTACGATTCGCCTTTCTTCGAGCATACGGATGGCTACCATGTGTTCTCCCCGTACGGCCTCGACGAATCCATCATCAAGACGATTCCACTCTCCGTCTATACTGCCAAGAGCCGCCGTGACAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTGGAGTTTGAAGACGACGATTACGTCCGAACGCTTCCGATTTGTTCTCACGCATTTCACGTTGATTGTATAGACGTATGGCTTAGATCACACGCGAACTGTCCTCTCTGTCGCGCGGTGGTTTTCAGGCCAGAATCTCCGTTCACGCCAGTTATGGCAGCAAGAATCCGGCCAAGCCTCGACGATACGATCTTACAAAGCATCGTATTAGAGCCGCTAGCGGAAGGTCCTATTCCAAATCGAGATTCTTATCACGCAACAGAATCGGAAATCACGCCTTGCGTTGATGAACCAAGGAACAGTAATTCGTTAGAGGATCAAATGAACGGGCGAGATTTCTTACTGAAACGATCGTATTCATTCGGATTCGAACGAAGCTTGGCGTCAGAGAGAATGATTCTGGAACCAGCAACCGCATCGCCATGGAGGTACCGCCGTGGAAGCTTCTGGAGCAAACGGCCATCGCCGTTCGGATCTCTACCGAAGGCGAGAGTATTCTCATTCCGATACTACAGAGGAATGAAATCGCCGTTCTTCAGACGACGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCATCGAGACGAAGCAAGTCGATGACAAGTCCAATGTTTCTCCGATCGTCGGTAACCAGCGGAGGAGCAGCAACGTTCTCATCGAGCCGATTGAGATGCGGAGATCCCGAGGCATTACTATCACCGGAGAGATTCAACCGAAGATGA 1245 54.46 MSTAPSPSPSSSPSPSPSTSSSSYAAAVNFPPPSSLLPGKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHVIPPILLLIRRHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEHTDGYHVFSPYGLDESIIKTIPLSVYTAKSRRDSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILQSIVLEPLAEGPIPNRDSYHATESEITPCVDEPRNSNSLEDQMNGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTSGGAATFSSSRLRCGDPEALLSPERFNRR 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4360520 4361764 - Cp4.1LG16g02230.1 Cpe16g00220 482595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00220 414 MobiDBLite consensus disorder prediction 1 24 - -
Cpe16g00220 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 206 IPR013083 -
Cpe16g00220 414 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 385 - -
Cpe16g00220 414 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 385 IPR044675 -
Cpe16g00220 414 Pfam Ring finger domain 159 202 IPR001841 -
Cpe16g00220 414 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Cpe16g00220 414 SMART ring_2 160 201 IPR001841 -
Cpe16g00220 414 CDD RING-H2_PA-TM-RING 159 202 - -
Cpe16g00220 414 SUPERFAMILY RING/U-box 151 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00220 Cpe-Chr16:4360520 Cpe15g00207 Cpe-Chr15:1711316 4.31E-24 dispersed
Cpe16g00220 Cpe-Chr16:4360520 Cpe05g00173 Cpe-Chr5:912739 2.46E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00220 - K19041 csv:101206300 668.692