Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00224 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTCCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCGAGCGCTCCTCATTGCGGCAATGCTATACGTGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTATATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACGAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAACGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATTCCGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCCGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.5 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGPATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERNRLSSLNSDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4384069 4389236 + Cp4.1LG16g02210.1 Cpe16g00224 482599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00224 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cpe16g00224 589 Gene3D - 248 496 - -
Cpe16g00224 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cpe16g00224 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 191 259 - -
Cpe16g00224 589 SMART ibrneu5 190 252 IPR002867 -
Cpe16g00224 589 SMART ibrneu5 260 325 IPR002867 -
Cpe16g00224 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cpe16g00224 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cpe16g00224 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 114 202 - -
Cpe16g00224 589 Pfam Ariadne domain 329 589 IPR045840 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 260 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00507 Cpe-Chr12:4972647 Cpe16g00224 Cpe-Chr16:4384069 2.49E-30 dispersed
Cpe15g00198 Cpe-Chr15:1638593 Cpe16g00224 Cpe-Chr16:4384069 5.40E-11 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe17g01099 Cpe-Chr17:8344123 5.76E-56 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe05g01240 Cpe-Chr5:8679852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00224 K11968 - csv:101205066 1129.39