Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00224 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGTGAGTCTCTTCAGGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGTTTCTAAAGGTCCCGCGACTAAGGTTATTACAAAGGAATCTCTCCTTGCTGCACAGAAGGAGGACATGCGTAGAGTAATGGAGTTACTATCATTGAGGGAGCACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACTGCTGGTGTTACTATGATTGAGAATCGAAGTAATTGTTCCTCTGAGACTTCCTCCGTGGTGATGTGTGATATCTGCATGGAGGAAGTACATAGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAGAGTCGTAGAATCAGATGCATGGCCCACAAATGTAATGCAATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTCCTTCTTGAATCATACATCGAGGATAACAAAAGAGTCAAGTGGTGTCCGAGCGCTCCTCATTGCGGCAATGCTATACGTGTGGAGGATGATGAGTTCTGTGAAGTAGAATGTTCTTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGATGCTCACTCGCCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGAGGCTGTAATCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGAGAGCACACTTGGTCGAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTGTACCGTTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAAGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTGTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCGTTCTATATGTTTGGGGATGAGCTATTCAAAGACGAGATGACTCAGGAGGAAAGGGAGATAAGGCAGCATCTATTTGAGGACCAACAGCAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCGTTTGATCAATACACGAAAGACAGGGTAATGGATATAAGGATGCAAGTCATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTACGACTGTATTGAGAACGATCTTCTGGGTTCACTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCGCTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGAACAAGTGGAGGATTGTCAGAGCGGAATAGACTGAGTAGCTTGAATTCCGATGAGAACGGATGCTCGTCTAGGAAGCGTGCCAGAGCCGAAGTCGTTACTGGCAACTGCTTCGATCTAAACTTACCTGCTGAGGTTGTTGATAGAAACTGA 1770 43.5 MEDCISSDEDYYDSDRESLQGLENEDSEIQWVSKGPATKVITKESLLAAQKEDMRRVMELLSLREHHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNCSSETSSVVMCDICMEEVHSNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSDAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEEKESMLRDFSWVNNGLCRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIRQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDRVMDIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERNRLSSLNSDENGCSSRKRARAEVVTGNCFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4384069 4389236 + Cp4.1LG16g02210.1 Cpe16g00224 482599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00224 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cpe16g00224 589 Gene3D - 248 496 - -
Cpe16g00224 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cpe16g00224 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 191 259 - -
Cpe16g00224 589 SMART ibrneu5 190 252 IPR002867 -
Cpe16g00224 589 SMART ibrneu5 260 325 IPR002867 -
Cpe16g00224 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cpe16g00224 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cpe16g00224 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 114 202 - -
Cpe16g00224 589 Pfam Ariadne domain 329 589 IPR045840 -
Cpe16g00224 589 SUPERFAMILY RING/U-box 260 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00224 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1129.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00507 Cpe-Chr12:4972647 Cpe16g00224 Cpe-Chr16:4384069 2.49E-30 dispersed
Cpe15g00198 Cpe-Chr15:1638593 Cpe16g00224 Cpe-Chr16:4384069 5.40E-11 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe17g01099 Cpe-Chr17:8344123 5.76E-56 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe05g01240 Cpe-Chr5:8679852 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01240 . 215 641 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Cpe16g00224 . 164 589 ARIADNE family AT4G34370 71.8 3.3e-181 631.7
Cpe05g01240 . 109 578 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Cpe16g00224 . 58 542 ARIADNE family AT2G16090 76.8 6.8e-223 770.4
Cpe16g00224 . 38 543 ARIADNE family AT3G27710 61.8 9.0e-184 640.6
Cpe05g01240 . 87 573 ARIADNE family AT3G27710 62.4 5.8e-183 637.9
Cpe05g01240 . 98 573 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Cpe16g00224 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Cpe07g00830 . 26 565 ARIADNE family AT1G05890 62.9 3.1e-217 751.9
Cpe17g01099 CST 56 563 ARIADNE family AT1G05890 68.1 3.3e-211 731.9
Cpe12g00507 CST 117 540 ARIADNE family AT1G05890 60.2 1.2e-160 563.9
Cpe07g00830 . 26 620 ARIADNE family AT1G65430 71.5 7.6e-258 886.7
Cpe17g01099 CST 16 622 ARIADNE family AT1G65430 65.4 7.9e-239 823.5
Cpe12g00507 CST 72 595 ARIADNE family AT1G65430 57.8 3.9e-185 645.2
Cpe07g00830 . 24 461 ARIADNE family AT2G31780 55.3 2.9e-148 522.3
Cpe17g01099 CST 53 488 ARIADNE family AT2G31780 53.3 3.9e-140 495.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00224 Cpe_Chr16 FPKM 0.0 0.0 0.0 0.0 0.227607 0.0 0.0 0.0 0.0 0.407265