Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe16g00234 | ATGAATGCGGCGATCTGGAGCCAACGAACCCCCAAATTAAGCCGGGAAAGAAGAACTGCGGTCGGCGTCGTCTGGGAGGACCGGCGAGAGTTTCTCCGGCGCCATTCAACGACTAGTCTTTTGCCGGAAACTCTTCTAATGTCTTCTTCATCGGATTCTCCCTCGCCTACCTCGGATTCTTCATCGTCGCCGCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCGGGTTCCTCTCCGTCTCCGCCGTCGGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGATTCTTCTCCACCTCCGTCGAACGATTCTCCTCCACCTCCGGCGGACGCATCGCCGCCGCCGACGCCTCCTGATTCCTCTTCTTCACCCCGACCGCCACGACGTCAAGATTCGAAATCTTCATCTCCTCCATCTCCTCCGCCGCCGCACGGTTCCTCTAGGCATTCTCCTTCGCCTCCTCCGAAATCGATTACGCATCACTCCCAATCCGCAAACTCCTCATCCGGCGGCTCTAAAGCCGATGCGTTGCCGATCTTTACAGGACTGGCGGTGGCGGTAGGATTTATGCTACTCGCCGTGGTTTTAATGTTCTTCGCTTGCAGGCGAAAGAAACAGAACCAAAATAGTGATTCCATGGGCTTCGATGAACCGTCTTCTCCGAGAAGTGGGGATCCATATTACATGAGAATGAATTACAACTGGAACAACCAAAACGAACACGTCGTGAACATAACGCCAGTCGGCGGCGGAGGGCAAGGAGGAGAATGGCCGCAGCCGCCGCCTCCGCCGCCGACTCCTCCGCCGTTGGGAATAGTTAGCAGTGATATGAGTTCGAATAACTCGGGGCCACACGGGCCGGTGTTGCCGCCGCCTCACCCGTCGGTGGCGCTAGGGTTCAATAAGTGCACGTTCACATTCGACGAGCTGATGGCAGCGACGGGGGGATTCTCTCCGGCGAACCTGTTAGGGCAAGGGGGATTCGGGTACGTTCACAAAGGAGTTTTGCCTAACGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCGGGAAGTGGTCAAGGAGGTCGGGAATTCGCGGCGGAAGTGGAGATCATTAGCCGCGTTCACCACCGCCATTTGGTGTCGTTAATCGGACATTGCATCGCCGGTGAACGGAAGTTGTTGGTTTACGAATTTGTCCCTAATAACAACCTCCAATTCCACCTTCGCGGCAAGGGGCAGTCACCGTTGGACTGGCCAACCAGGGTGAAGATAGCATTGGGCTCAGCCAAGGGCCTCGCCTATCTCCACGAAGACTGTCATCCTCGCATCATTCATCGAGATATCAAGACTGCAAATATTCTCATAGACATGAGTTTCGAAGCCAAGGCGAGACCTCTGTGCATGCAAGCAATGAAGGAAGCAAACTATGAGGTGCTGGCTGATCCACGGTTGGAGAAGAAGTACACCGCCCCCGAAATGGGCTGCATGGATATGAGCGACGGAGTAAAGGCGGGGCAGAGCTCGTACTTCGGCTCAAGCACGACCTCGGAGAACGACACAAGCTCCGATACCGCGGACGTGAAGAGGCTCCAAAAGAAAGCGATGGACAGCCGGGAGGAAATAAGCAGCGATTGCGGCGGCACTAGCGAGTATGGACTAAACCCGTCGGCAACAAGCGGCGAGATCAGCTTGAAGCCCGGCCGCCAGTCATCCCCAAACGTACGGACCACCTAA | 1833 | 57.28 | MNAAIWSQRTPKLSRERRTAVGVVWEDRREFLRRHSTTSLLPETLLMSSSSDSPSPTSDSSSSPPPPPSDSSPPPPSGSSPPPPSGSSPPPPSGSSPSPPSGSSPPPPSGSSPPPPSGSSPPPPSGSSPPPPSDSSPPPSNDSPPPPADASPPPTPPDSSSSPRPPRRQDSKSSSPPSPPPPHGSSRHSPSPPPKSITHHSQSANSSSGGSKADALPIFTGLAVAVGFMLLAVVLMFFACRRKKQNQNSDSMGFDEPSSPRSGDPYYMRMNYNWNNQNEHVVNITPVGGGGQGGEWPQPPPPPPTPPPLGIVSSDMSSNNSGPHGPVLPPPHPSVALGFNKCTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGGREFAAEVEIISRVHHRHLVSLIGHCIAGERKLLVYEFVPNNNLQFHLRGKGQSPLDWPTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKARPLCMQAMKEANYEVLADPRLEKKYTAPEMGCMDMSDGVKAGQSSYFGSSTTSENDTSSDTADVKRLQKKAMDSREEISSDCGGTSEYGLNPSATSGEISLKPGRQSSPNVRTT | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4427342 | 4431906 | + | Cp4.1LG16g02350.1 | Cpe16g00234 | 482609 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe16g00234 | 610 | Pfam | Protein tyrosine and serine/threonine kinase | 361 | 526 | IPR001245 | GO:0004672|GO:0006468 | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 33 | 212 | - | - | |
Cpe16g00234 | 610 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 70 | 495 | - | - | |
Cpe16g00234 | 610 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 496 | 529 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 540 | 610 | - | - | |
Cpe16g00234 | 610 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 70 | 495 | - | - | |
Cpe16g00234 | 610 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 496 | 529 | - | - | |
Cpe16g00234 | 610 | Gene3D | Transferase(Phosphotransferase) domain 1 | 432 | 568 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 59 | 163 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 555 | 573 | - | - | |
Cpe16g00234 | 610 | Gene3D | Phosphorylase Kinase; domain 1 | 333 | 431 | - | - | |
Cpe16g00234 | 610 | SUPERFAMILY | Protein kinase-like (PK-like) | 336 | 528 | IPR011009 | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 575 | 610 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 37 | 58 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 295 | 310 | - | - | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 190 | 212 | - | - | |
Cpe16g00234 | 610 | ProSitePatterns | Protein kinases ATP-binding region signature. | 362 | 384 | IPR017441 | GO:0005524 | |
Cpe16g00234 | 610 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 476 | 488 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 286 | 324 | - | - | |
Cpe16g00234 | 610 | SMART | serkin_6 | 356 | 585 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe16g00234 | 610 | ProSiteProfiles | Protein kinase domain profile. | 356 | 610 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe16g00234 | 610 | MobiDBLite | consensus disorder prediction | 540 | 554 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe16g00234 | Cpe-Chr16:4427342 | Cpe04g01128 | Cpe-Chr4:9750604 | 2.39E-67 | dispersed | |
Cpe16g00234 | Cpe-Chr16:4427342 | Cpe05g01252 | Cpe-Chr5:8763463 | 2.93E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62885 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-26 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe16g00234 | - | - | csv:101217306 | 434.876 |