Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00234 ATGAATGCGGCGATCTGGAGCCAACGAACCCCCAAATTAAGCCGGGAAAGAAGAACTGCGGTCGGCGTCGTCTGGGAGGACCGGCGAGAGTTTCTCCGGCGCCATTCAACGACTAGTCTTTTGCCGGAAACTCTTCTAATGTCTTCTTCATCGGATTCTCCCTCGCCTACCTCGGATTCTTCATCGTCGCCGCCGCCTCCGCCGTCTGATTCTTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCGGGTTCCTCTCCGTCTCCGCCGTCGGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGGTTCCTCTCCGCCTCCGCCGTCTGATTCTTCTCCACCTCCGTCGAACGATTCTCCTCCACCTCCGGCGGACGCATCGCCGCCGCCGACGCCTCCTGATTCCTCTTCTTCACCCCGACCGCCACGACGTCAAGATTCGAAATCTTCATCTCCTCCATCTCCTCCGCCGCCGCACGGTTCCTCTAGGCATTCTCCTTCGCCTCCTCCGAAATCGATTACGCATCACTCCCAATCCGCAAACTCCTCATCCGGCGGCTCTAAAGCCGATGCGTTGCCGATCTTTACAGGACTGGCGGTGGCGGTAGGATTTATGCTACTCGCCGTGGTTTTAATGTTCTTCGCTTGCAGGCGAAAGAAACAGAACCAAAATAGTGATTCCATGGGCTTCGATGAACCGTCTTCTCCGAGAAGTGGGGATCCATATTACATGAGAATGAATTACAACTGGAACAACCAAAACGAACACGTCGTGAACATAACGCCAGTCGGCGGCGGAGGGCAAGGAGGAGAATGGCCGCAGCCGCCGCCTCCGCCGCCGACTCCTCCGCCGTTGGGAATAGTTAGCAGTGATATGAGTTCGAATAACTCGGGGCCACACGGGCCGGTGTTGCCGCCGCCTCACCCGTCGGTGGCGCTAGGGTTCAATAAGTGCACGTTCACATTCGACGAGCTGATGGCAGCGACGGGGGGATTCTCTCCGGCGAACCTGTTAGGGCAAGGGGGATTCGGGTACGTTCACAAAGGAGTTTTGCCTAACGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCGGGAAGTGGTCAAGGAGGTCGGGAATTCGCGGCGGAAGTGGAGATCATTAGCCGCGTTCACCACCGCCATTTGGTGTCGTTAATCGGACATTGCATCGCCGGTGAACGGAAGTTGTTGGTTTACGAATTTGTCCCTAATAACAACCTCCAATTCCACCTTCGCGGCAAGGGGCAGTCACCGTTGGACTGGCCAACCAGGGTGAAGATAGCATTGGGCTCAGCCAAGGGCCTCGCCTATCTCCACGAAGACTGTCATCCTCGCATCATTCATCGAGATATCAAGACTGCAAATATTCTCATAGACATGAGTTTCGAAGCCAAGGCGAGACCTCTGTGCATGCAAGCAATGAAGGAAGCAAACTATGAGGTGCTGGCTGATCCACGGTTGGAGAAGAAGTACACCGCCCCCGAAATGGGCTGCATGGATATGAGCGACGGAGTAAAGGCGGGGCAGAGCTCGTACTTCGGCTCAAGCACGACCTCGGAGAACGACACAAGCTCCGATACCGCGGACGTGAAGAGGCTCCAAAAGAAAGCGATGGACAGCCGGGAGGAAATAAGCAGCGATTGCGGCGGCACTAGCGAGTATGGACTAAACCCGTCGGCAACAAGCGGCGAGATCAGCTTGAAGCCCGGCCGCCAGTCATCCCCAAACGTACGGACCACCTAA 1833 57.28 MNAAIWSQRTPKLSRERRTAVGVVWEDRREFLRRHSTTSLLPETLLMSSSSDSPSPTSDSSSSPPPPPSDSSPPPPSGSSPPPPSGSSPPPPSGSSPSPPSGSSPPPPSGSSPPPPSGSSPPPPSGSSPPPPSDSSPPPSNDSPPPPADASPPPTPPDSSSSPRPPRRQDSKSSSPPSPPPPHGSSRHSPSPPPKSITHHSQSANSSSGGSKADALPIFTGLAVAVGFMLLAVVLMFFACRRKKQNQNSDSMGFDEPSSPRSGDPYYMRMNYNWNNQNEHVVNITPVGGGGQGGEWPQPPPPPPTPPPLGIVSSDMSSNNSGPHGPVLPPPHPSVALGFNKCTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKSGSGQGGREFAAEVEIISRVHHRHLVSLIGHCIAGERKLLVYEFVPNNNLQFHLRGKGQSPLDWPTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKARPLCMQAMKEANYEVLADPRLEKKYTAPEMGCMDMSDGVKAGQSSYFGSSTTSENDTSSDTADVKRLQKKAMDSREEISSDCGGTSEYGLNPSATSGEISLKPGRQSSPNVRTT 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4427342 4431906 + Cp4.1LG16g02350.1 Cpe16g00234 482609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00234 610 Pfam Protein tyrosine and serine/threonine kinase 361 526 IPR001245 GO:0004672|GO:0006468
Cpe16g00234 610 MobiDBLite consensus disorder prediction 33 212 - -
Cpe16g00234 610 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 70 495 - -
Cpe16g00234 610 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 496 529 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 540 610 - -
Cpe16g00234 610 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 70 495 - -
Cpe16g00234 610 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 496 529 - -
Cpe16g00234 610 Gene3D Transferase(Phosphotransferase) domain 1 432 568 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 170 189 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 59 163 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 1 20 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 555 573 - -
Cpe16g00234 610 Gene3D Phosphorylase Kinase; domain 1 333 431 - -
Cpe16g00234 610 SUPERFAMILY Protein kinase-like (PK-like) 336 528 IPR011009 -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 575 610 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 37 58 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 295 310 - -
Cpe16g00234 610 MobiDBLite consensus disorder prediction 190 212 - -
Cpe16g00234 610 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Cpe16g00234 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Cpe16g00234 610 MobiDBLite consensus disorder prediction 286 324 - -
Cpe16g00234 610 SMART serkin_6 356 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00234 610 ProSiteProfiles Protein kinase domain profile. 356 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00234 610 MobiDBLite consensus disorder prediction 540 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00234 Cpe-Chr16:4427342 Cpe04g01128 Cpe-Chr4:9750604 2.39E-67 dispersed
Cpe16g00234 Cpe-Chr16:4427342 Cpe05g01252 Cpe-Chr5:8763463 2.93E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62885 PF07714 PK_Tyr_Ser-Thr 1.30E-26 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00234 - - csv:101217306 434.876