Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00246 ATGGCTCAGAATCTCAAGGTTCTAATCATTGGTGGAACTGGTTACATCGGAAAATTCATTGTACAAGCTAGCGCCAAAGCCGGTCATCCTACCTATGCATTGATCCGCAAGTCTTCGCTCGGAAGCTCTGCCAAGTCTCAAATCATCAATCATTTCAAAAGCCTTGGTGTTAATTTCCTCTTCGGCGATCTCTTCGACAATGAGAGTTTGGTTAAGGCGATAAAGCAGGTTGATGTGGTGATATCCACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGATCCTATCTGCTATCAAACAAGCTGGCAATGTCAAGAGTTTGTGTGTTTTGGAAATTTTGAGCATTGGAATTTGTGTGGTACAGAGATTCTTTCCTACGGAATTCGGCAACGATGCCGATCACATCGACGCGGTGGAGCCAGCAAAATCGATGTACACTGCAAAGGCTGAATTTCGTAGGGTTGTTGAGGCTGAGGGAATCCCGCACACATTTGTGGTATGCAATTTCTTCGATGGTTACTTCCTTAGCAATTTGTCTCAGCCAGATGCATCCGTCCCACCTAGAGACAAAGTCGTAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAGGAAGAAGACGTTGGGACGTACACCATCCGAGCCATAGATGATCCAAGAACCCTCAACAAGATCATGTACATTAGACCCGCAGCCAACATCTACTCGACCAACGATCTGGTCTCACTGTGGGAGAGAAAAATTGGCAAGACTCTTAGAAGGGTCTATGTCCCAGAGGAGGAGGTGTTGAAGAACATCCAAGAGGCCTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCACAGGTGAGGGGATCTCAAACTAACTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCGCTGTACCCGGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTAA 975 45.54 MAQNLKVLIIGGTGYIGKFIVQASAKAGHPTYALIRKSSLGSSAKSQIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKSLCVLEILSIGICVVQRFFPTEFGNDADHIDAVEPAKSMYTAKAEFRRVVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYIRPAANIYSTNDLVSLWERKIGKTLRRVYVPEEEVLKNIQEASYPLNIELALCHTAQVRGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4505107 4507530 + Cp4.1LG16g02390.1 Cpe16g00246 482621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00246 324 Gene3D - 170 320 - -
Cpe16g00246 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 283 IPR036291 -
Cpe16g00246 324 Pfam NmrA-like family 121 311 IPR008030 -
Cpe16g00246 324 Pfam NmrA-like family 7 107 IPR008030 -
Cpe16g00246 324 Gene3D - 6 310 - -
Cpe16g00246 324 PANTHER PINORESINOL REDUCTASE-RELATED 1 324 - -
Cpe16g00246 324 CDD PCBER_SDR_a 6 319 IPR045312 GO:0016491
Cpe16g00246 324 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 1 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00246 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01264 Cpe-Chr5:8827948 Cpe16g00246 Cpe-Chr16:4505107 3.50E-179 dispersed
Cpe07g00415 Cpe-Chr7:2691065 Cpe16g00246 Cpe-Chr16:4505107 5.12E-151 dispersed
Cpe15g00177 Cpe-Chr15:1447840 Cpe16g00246 Cpe-Chr16:4505107 9.01E-58 dispersed
Cpe15g00550 Cpe-Chr15:6345602 Cpe16g00246 Cpe-Chr16:4505107 3.94E-97 dispersed
Cpe16g00245 Cpe-Chr16:4500867 Cpe16g00246 Cpe-Chr16:4505107 5.41E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g370 . . . Bda08g00939 . . Bma05g00446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe16g00246 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe16g00246 Cpe_Chr16 FPKM 16.730047 20.006262 10.041135 9.946568 8.138692 6.064559 7.883594 7.827694 9.953933 7.133638